Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M04
(362 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 146 9e-37
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 146 9e-37
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.17
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 0.68
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 0.68
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 26 2.1
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 25 3.6
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 3.6
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 3.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 24 6.3
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 24 6.3
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 24 8.3
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 24 8.3
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 24 8.3
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 146 bits (354), Expect = 9e-37
Identities = 63/95 (66%), Positives = 81/95 (85%)
Frame = +3
Query: 15 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 194
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 195 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELW 299
R+RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVW 95
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 146 bits (354), Expect = 9e-37
Identities = 63/95 (66%), Positives = 81/95 (85%)
Frame = +3
Query: 15 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 194
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 195 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELW 299
R+RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVW 95
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.17
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 217 SVFLRTRAREWTATGFLMTRPSLIILRMFC 128
S F T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 0.68
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 257 PLTKATVTSFP-ARLCVFANTSAGMDSNWFLDDQTILDHLTD 135
P A + SF +R CV N + NW+ + I HLTD
Sbjct: 121 PFQIARIISFEKSRPCVSTNLYDSVRLNWYFRPRDIQRHLTD 162
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.5 bits (58), Expect = 0.68
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 137 DVLSGISISDFIDLVWIKPHLFFTASHNRGCK 42
+VLS + +D + PHL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 2.1
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 3 TRARMSSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 143
T + S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 312 THLQDSYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 3.6
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 278 SSISCTSPLTKATVTSFPARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGIS 117
S ISC SP+T TV SF A L + + G W + +L L S +S
Sbjct: 291 SIISCQSPITTLTV-SFDASLLI-SGDKDGNVLVWDSVSRQVLRRLVQYYSPVS 342
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 3.6
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = +3
Query: 75 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 221
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 222 RRKGR 236
R+ R
Sbjct: 349 RKSLR 353
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 3.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 129 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 245
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.2 bits (50), Expect = 6.3
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = +3
Query: 117 TNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 215
T S ++ +IK+ +KP ++++++KN+
Sbjct: 912 TESLNQVKNLIKNDTSNRKPFGAENQSKLKKNS 944
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 24.2 bits (50), Expect = 6.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 27 KLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 158
+L +RLAA + RC ++ W D + NI+K+I DG
Sbjct: 1113 QLAERLAARLDRCKTQRQW-DHVVYALSLLPHKADNIQKLIDDG 1155
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 23.8 bits (49), Expect = 8.3
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -3
Query: 225 CAPLCFCEHER 193
C P+CFC +E+
Sbjct: 1236 CCPVCFCPYEK 1246
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 8.3
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -1
Query: 347 CSVLKQQLTEHPLPLNP*FFLWHSSISCTSPLTKATVTSFPARLC 213
C Q E P+ LNP F + + SP T+ S +R C
Sbjct: 308 CKWQFSQFMELPISLNPDFLISNIHKVSESPRVWVTILSSLSRSC 352
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 23.8 bits (49), Expect = 8.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 170 LDDQTILDHLTDVLSGISISD 108
LDDQ LD+ D++S IS+SD
Sbjct: 11 LDDQ--LDYQVDLVSEISVSD 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,717
Number of Sequences: 5004
Number of extensions: 25729
Number of successful extensions: 90
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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