Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M03
         (69 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   0.59 
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    19   4.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   7.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    19   7.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   7.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    18   9.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 0.59
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 2   HEESPYLLMELPYKEPR 52
           +++SPYL+ E P +E R
Sbjct: 83  YQQSPYLMYENPDEEKR 99


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
          protein.
          Length = 87

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 14 PYLLMELPYKEPRSN 58
          PY+   +  ++PRSN
Sbjct: 31 PYIRQAVAMRDPRSN 45


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 4/12 (33%), Positives = 9/12 (75%)
 Frame = -3

Query: 67  ENIVRPRLLVWQ 32
           + + +PR +VW+
Sbjct: 392 QGVTKPRYMVWR 403


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 4/12 (33%), Positives = 9/12 (75%)
 Frame = -3

Query: 67  ENIVRPRLLVWQ 32
           + + +PR +VW+
Sbjct: 307 QGVTKPRYMVWR 318


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 4/12 (33%), Positives = 9/12 (75%)
 Frame = -3

Query: 67  ENIVRPRLLVWQ 32
           + + +PR +VW+
Sbjct: 626 QGVTKPRYMVWR 637


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = -1

Query: 39  YGNSINRYGDSSC 1
           Y +  + +GDS C
Sbjct: 262 YEDEFDEFGDSKC 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.132    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,433
Number of Sequences: 438
Number of extensions: 148
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 4
effective length of database: 144,591
effective search space used:  2602638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.7 bits)