Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M02
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...   155   3e-39
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...   150   1e-37
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.53 
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    28   0.92 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   1.2  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   1.2  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    27   2.1  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    26   2.8  
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.5  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   6.5  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   8.6  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   8.6  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   8.6  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score =  155 bits (377), Expect = 3e-39
 Identities = 79/122 (64%), Positives = 93/122 (76%), Gaps = 1/122 (0%)
 Frame = +3

Query: 57  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 236
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   + V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 237 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 413
            +T+FGGG+STGFALIYD+ +  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV 
Sbjct: 60  LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVF 119

Query: 414 GT 419
           GT
Sbjct: 120 GT 121


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score =  150 bits (363), Expect = 1e-37
 Identities = 74/122 (60%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
 Frame = +3

Query: 57  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 236
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK     V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 237 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 413
            +T++GGG++TGFALIYD ++  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV 
Sbjct: 60  LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVF 119

Query: 414 GT 419
           GT
Sbjct: 120 GT 121


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 67  PSLIFDYFRDFGVKTHVSPSLV 2
           P L+FDYF D G K HV+P+ V
Sbjct: 53  PDLLFDYFID-GHKIHVNPNAV 73


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 309 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 407
           K+ P  R    G + +KR  RK++ E+KN   K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 174 EIREKLAKMYKVTPDVVFVFGFKTNFGG 257
           +++E LAK YK+ P  +F   F T+  G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 245 RLETEHENY-VWRHFVHFSELFTDLSFADGRFSWMQDIAYHL 123
           RLE EH    V R+      L    +F D R+ W Q+I+  L
Sbjct: 261 RLEVEHPGEEVLRNNRILGRLMPSRAFGDARYKWSQEISERL 302


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 349 MKRRGRHANSVRNVRTE*RRYEVPRN 426
           +KRR R  N++R +  E RRY +P++
Sbjct: 28  VKRRKRLFNAIRKLWNERRRYRMPKD 53


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 417 YLVPSSFCSYVPYAVCVSASSFHTGRDERVCVLAQTSL 304
           Y VP      +  A+ V A   H G+D+  C LA+  L
Sbjct: 65  YDVPFLINDRIDVALAVGADGVHIGQDDMDCALARKIL 102


>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 422 LGTSYLLHSVLTFLTLFACRPLLFIQAVTSESVFWL 315
           L TS+   S+L  L  +   PLLF+ +  S S + L
Sbjct: 17  LNTSFSFSSLLCILCFYKDGPLLFLYSPLSASYYCL 52


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 272 SGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQDI 135
           +G +A  E      HENY      H  E++ D    + R ++  DI
Sbjct: 60  NGMYAGAENHNVENHENYTMVGHDHMEEVYGDDLVNEPRIAYSSDI 105


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 331 SLCFGSNFFAKSSVS*IKANPVDLP 257
           S CF +N F+KSS+  I +N   +P
Sbjct: 766 SFCFINNLFSKSSLKAISSNDSIVP 790


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 303 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 407
           +KK + +    +     +K   +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +3

Query: 309 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 410
           +F  KH L RHG  EKKR       R+Q   +  R KKV
Sbjct: 58  EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 351 EKKRPTRKQRKERKNRMKKVRGT 419
           E+ +P  ++ +E +NR+ ++RGT
Sbjct: 90  ERLKPQDERTQEERNRVDEIRGT 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,149
Number of Sequences: 5004
Number of extensions: 41553
Number of successful extensions: 137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)