Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M02
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal pro...   175   2e-44
Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical pr...    42   2e-04
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    40   0.001
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    29   1.9  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    29   1.9  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    29   1.9  
AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z68751-5|CAA92975.1|  468|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p...    27   7.8  
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p...    27   7.8  
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p...    27   7.8  
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 24 protein.
          Length = 131

 Score =  175 bits (425), Expect = 2e-44
 Identities = 81/116 (69%), Positives = 96/116 (82%), Gaps = 1/116 (0%)
 Frame = +3

Query: 75  TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 254
           TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V  FGF++  G
Sbjct: 6   TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65

Query: 255 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 419
           GGKS GFAL+YDT+D AKKFEPK+RL R GL  K ++P RKQRKERKNR KKVRGT
Sbjct: 66  GGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKVRGT 121


>Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical
           protein T26G10.3 protein.
          Length = 91

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 126 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 224
           MV +V+ PG+PT  K +IREK+A  Y + PD +
Sbjct: 1   MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 270 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 398
           GF L+YDT D A K++P+H  + H      R +  +RKE++ R
Sbjct: 54  GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 15  DTCVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 155
           D C+ +P+ RK S  S   A +RT  F   +  + K+M+ D+   PGK
Sbjct: 39  DNCIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 15  DTCVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 155
           D C+ +P+ RK S  S   A +RT  F   +  + K+M+ D+   PGK
Sbjct: 39  DNCIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 15  DTCVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 155
           D C+ +P+ RK S  S   A +RT  F   +  + K+M+ D+   PGK
Sbjct: 39  DNCIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83


>AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical
           protein C45H4.14b protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 282 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 407
           I   LD  KK E KHR A+     +K+  ++Q K+ K  +KK
Sbjct: 17  ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 57


>AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical
           protein C45H4.14a protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 282 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 407
           I   LD  KK E KHR A+     +K+  ++Q K+ K  +KK
Sbjct: 64  ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 104


>Z68751-5|CAA92975.1|  468|Caenorhabditis elegans Hypothetical
           protein T05E11.5 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 457 HHFLAAAPTLDFLVPRTFFILFL 389
           HHF AA P L +LVP   F+  L
Sbjct: 410 HHFKAAQPALLYLVPCCLFVPLL 432


>AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical
           protein Y51A2A.6 protein.
          Length = 140

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = +3

Query: 237 FKTNFGGGKSTGFALI----YDTLDLAKKFEPKHRLARHGLYEKKRPTRKQR 380
           F  N GGGK+ GF+        + +  KK    H    HG   + RPTR  R
Sbjct: 21  FVKNNGGGKNHGFSSASSSSSSSSEEGKKHGHGHHHHNHGRPSRPRPTRPPR 72


>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
           protein F07A11.6e protein.
          Length = 2101

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 351 EKKRPTRKQRKERKNRMKKVR 413
           E+KR  +K+R ERK   +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840


>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
            F07A11.6c protein.
          Length = 2392

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 351  EKKRPTRKQRKERKNRMKKVR 413
            E+KR  +K+R ERK   +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131


>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
            F07A11.6b protein.
          Length = 2407

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 351  EKKRPTRKQRKERKNRMKKVR 413
            E+KR  +K+R ERK   +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146


>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
            F07A11.6a protein.
          Length = 2211

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 351  EKKRPTRKQRKERKNRMKKVR 413
            E+KR  +K+R ERK   +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146


>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
           protein F07A11.6e protein.
          Length = 2101

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 351 EKKRPTRKQRKERKNRMKKVR 413
           E+KR  +K+R ERK   +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840


>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
            protein F07A11.6c protein.
          Length = 2392

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 351  EKKRPTRKQRKERKNRMKKVR 413
            E+KR  +K+R ERK   +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131


>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
            protein F07A11.6b protein.
          Length = 2407

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 351  EKKRPTRKQRKERKNRMKKVR 413
            E+KR  +K+R ERK   +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146


>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
            F07A11.6a protein.
          Length = 2211

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 351  EKKRPTRKQRKERKNRMKKVR 413
            E+KR  +K+R ERK   +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,377,270
Number of Sequences: 27780
Number of extensions: 234902
Number of successful extensions: 759
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)