Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_M01
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0166 + 22864387-22865010,22866215-22866500,22867485-22868035 31 0.40
01_06_1231 - 35579409-35579965,35580147-35580432,35580986-35581636 29 1.6
01_06_1489 + 37728539-37729496,37730362-37730900 29 2.1
01_06_1232 - 35590544-35591100,35591186-35591471,35591565-35592215 29 2.1
01_03_0120 + 12717221-12717665,12718539-12718724,12719482-127195... 28 2.8
11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903... 27 4.9
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 27 8.6
02_04_0186 + 20754045-20754692,20754772-20755057,20756160-20756668 27 8.6
>05_05_0166 + 22864387-22865010,22866215-22866500,22867485-22868035
Length = 486
Score = 31.1 bits (67), Expect = 0.40
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 238 WIKIDVTYFRTPPGLLKIVELILGILCMALGSPWYSTWFVFV 363
W +DV +FR P + + ++ G++C+ G+ TW V
Sbjct: 272 WTCLDVIFFRKPSVIGAVQGMMTGLVCITPGAGLVQTWAAVV 313
>01_06_1231 - 35579409-35579965,35580147-35580432,35580986-35581636
Length = 497
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/66 (21%), Positives = 27/66 (40%)
Frame = +1
Query: 178 VTVDNKPVNAPSSQPGRSFDWIKIDVTYFRTPPGLLKIVELILGILCMALGSPWYSTWFV 357
+T +N S W +DV +F P + + ++ G++C+ G+ TW
Sbjct: 261 ITASIAVLNTNVSAAASLLTWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVHTWAA 320
Query: 358 FVDVTC 375
+ C
Sbjct: 321 ILMGIC 326
>01_06_1489 + 37728539-37729496,37730362-37730900
Length = 498
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 238 WIKIDVTYFRTPPGLLKIVELILGILCMALGSPWYSTWFVFV 363
W +DV +F+ P + + +I G++C+ G+ W V
Sbjct: 288 WTCLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIV 329
>01_06_1232 - 35590544-35591100,35591186-35591471,35591565-35592215
Length = 497
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +1
Query: 163 APETVVTVDNKPVNAPSSQPGRSFDWIKIDVTYFRTPPGLLKIVELILGILCMALGSPWY 342
AP TV +N S W +DV +F P + + ++ G++C+ G+
Sbjct: 258 APNVTATV--AVLNTNVSAATSLLTWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLV 315
Query: 343 STW 351
TW
Sbjct: 316 HTW 318
>01_03_0120 +
12717221-12717665,12718539-12718724,12719482-12719585,
12720096-12720620
Length = 419
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 256 TYFRTPPGLLKIVELILGILCMALGSPWYSTW 351
TYFR P G + L++ +C +L +P S +
Sbjct: 129 TYFRRPTGRISDGRLVIDFICESLNTPHLSPY 160
>11_06_0115 +
20288220-20288303,20289223-20289706,20290160-20290393,
20291811-20292770,20292931-20293404,20293406-20294664
Length = 1164
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 377 KQVTSTNTNHVEYHG-LPSAIHSIPSINSTIFNN 279
KQ+ + + ++HG LPS I P++ S I NN
Sbjct: 192 KQLMHLDLSQSKFHGRLPSWIGDFPAVRSLILNN 225
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 274 PGLLKIVELILGILCMALGSP 336
PGLLKI+++I +L + L +P
Sbjct: 3501 PGLLKILDIITSLLAIPLSTP 3521
>02_04_0186 + 20754045-20754692,20754772-20755057,20756160-20756668
Length = 480
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +1
Query: 238 WIKIDVTYFRTPPGLLKIVELILGILCMALGSPWYSTWFVFV 363
W +DV +F P + + +I G++C+ G+ W V
Sbjct: 280 WTILDVFFFGKPSVIGAVQGMITGLVCITPGAGLVQGWAAIV 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,620,807
Number of Sequences: 37544
Number of extensions: 234868
Number of successful extensions: 539
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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