Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_M01
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75533-8|CAA99821.1|  464|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U97013-1|AAB52340.2|  270|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U97013-2|AAV58868.1|  190|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    28   2.5  
Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z81509-6|CAB04153.2|  431|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AL132877-15|CAC70111.1|  628|Caenorhabditis elegans Hypothetical...    27   4.4  
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>Z75533-8|CAA99821.1|  464|Caenorhabditis elegans Hypothetical
           protein C54G4.9 protein.
          Length = 464

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -1

Query: 241 SSRTNVPVETMGHLPVYCPQSPLSRVPSFYEFNVFFYIQKVVT 113
           +++ N+P++ +  L +  P  P+  +  F + + +FYI  VV+
Sbjct: 167 ANKVNIPMKFLNELAIVSPFHPILVIEDFKKDSEYFYIPHVVS 209


>U97013-1|AAB52340.2|  270|Caenorhabditis elegans Hypothetical
           protein F28H1.4a protein.
          Length = 270

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +1

Query: 133 KKKR*IHRMMAPETVVTVDNKPVNAPSSQPGRSFDWIKIDVTYFRTPPGLLKIVELILGI 312
           +KK  ++     +T  TV        +  P    ++ ++D  Y RT  G++KIV ++L +
Sbjct: 76  QKKEKMYDSPRYQTTTTVVETTEYIGNDGPAVRIEFPRLDCEYIRTLGGIMKIVCIVLCL 135

Query: 313 LC---MALGSPWYS--TWFVFV 363
           L    + +G  +Y+   W  FV
Sbjct: 136 LTFIFVMMGPAYYTGVGWATFV 157


>U97013-2|AAV58868.1|  190|Caenorhabditis elegans Hypothetical
           protein F28H1.4b protein.
          Length = 190

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +1

Query: 169 ETVVTVDNKPVNAPSSQPGRSFDWIKIDVTYFRTPPGLLKIVELILGILC---MALGSPW 339
           +T  TV        +  P    ++ ++D  Y RT  G++KIV ++L +L    + +G  +
Sbjct: 8   QTTTTVVETTEYIGNDGPAVRIEFPRLDCEYIRTLGGIMKIVCIVLCLLTFIFVMMGPAY 67

Query: 340 YS--TWFVFV 363
           Y+   W  FV
Sbjct: 68  YTGVGWATFV 77


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
           potassium channelsprotein 2 protein.
          Length = 1564

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +1

Query: 163 APETVVTVDNKPVNAPSSQPGRSFDWIKIDVTYFR----TPPGLLKIVELILGILCMALG 330
           +PE V+   NK   A    P  SFDW+ +    FR        L K+ +L+     ++L 
Sbjct: 631 SPEPVLKRKNKERIARQQNPLHSFDWLNVSPRRFRPELCIKEDLPKLFKLVRNSTKISLE 690

Query: 331 SP 336
           SP
Sbjct: 691 SP 692


>Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical
           protein K08E3.7 protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 151 HRMMAPETVVTVDNKPVNAPSSQPGRSFDWIKID 252
           ++  A E ++ VD+K V  P+   G+SF W   D
Sbjct: 266 YQRKATERLIAVDDKGVTCPNVSCGQSFFWEPYD 299


>Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical
           protein F21A3.2b protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -1

Query: 241 SSRTNVP-VETMGHLPVYC 188
           S+R N+P + TMGH P+YC
Sbjct: 336 SNRHNIPWIITMGHRPMYC 354


>Z81509-6|CAB04153.2|  431|Caenorhabditis elegans Hypothetical
           protein F21A3.2a protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -1

Query: 241 SSRTNVP-VETMGHLPVYC 188
           S+R N+P + TMGH P+YC
Sbjct: 223 SNRHNIPWIITMGHRPMYC 241


>AL132877-15|CAC70111.1|  628|Caenorhabditis elegans Hypothetical
           protein Y105E8B.9 protein.
          Length = 628

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 408 NTKLHIKVTDETSDVDKHEPCRIPWT 331
           N  LH+K+  +  D DK+ P  I W+
Sbjct: 409 NNNLHVKMLQDMIDRDKNHPSVIAWS 434


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
           protein C08B11.3 protein.
          Length = 1244

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 261 IGNIDFDPVERTSRLRRWGIYRFIVHSHHC 172
           I N+ F+P  R + ++ W + +F++    C
Sbjct: 303 IRNLSFEPANRVTIVKTWPVMKFLIMCASC 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,404,394
Number of Sequences: 27780
Number of extensions: 226934
Number of successful extensions: 601
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)