Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L24
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0179 + 20952070-20955228                                         29   1.2  
02_02_0310 - 8842286-8843314                                           27   8.6  

>11_06_0179 + 20952070-20955228
          Length = 1052

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 114 CKERQLSNHQGFSHQ*CQTTEEKGHHGNNLNTNASPSC 1
           C+     NH+  S++   +  + GH  N    ++ PSC
Sbjct: 784 CRPVSTENHESLSYEKNTSLPKNGHDANGFGNSSEPSC 821


>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 188 SNLHQRNGLRPQHRHHHIPTR 250
           S +H   G R  H HHH+  R
Sbjct: 293 SRMHHHRGCRFHHHHHHLSFR 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,829,281
Number of Sequences: 37544
Number of extensions: 121684
Number of successful extensions: 293
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)