Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L23
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438 33 0.12
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 30 1.1
05_04_0381 - 20794385-20794612,20794671-20794796 30 1.1
10_08_0161 + 15312986-15313160,15313250-15313557,15313676-153137... 29 1.9
03_06_0599 + 34984869-34985319,34986581-34987563 29 1.9
07_01_0862 - 7172083-7172931 29 3.3
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339... 29 3.3
09_04_0168 - 15295442-15295477,15295478-15295552,15295660-152957... 27 7.7
07_01_0570 + 4228567-4228852,4229198-4229217 27 7.7
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 27 7.7
>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
Length = 617
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = -3
Query: 176 EPSEVVRLRSFKRSLLPLQLVGFPPPLSPSFRELSSLSPPPQRQW 42
+ S VV R+F P G PPP P R +S L PPP QW
Sbjct: 199 QQSTVVASRAFDAHRPPFHSAGLPPP--PR-RSMSLLLPPPPAQW 240
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 363 IRHIMIGSMRCIL*-ILTILNSQVQIINLRKRSIRNSLRTYRYNGFWDDMCK 211
IR I I S C+L ILT + V +N+R+ SL T YNG ++CK
Sbjct: 304 IRDISILSRLCLLRGILTAIPRTV--LNMRQLHSNGSLWTMLYNGILPELCK 353
>05_04_0381 - 20794385-20794612,20794671-20794796
Length = 117
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +1
Query: 55 GGGDREDNSRKEGESGGGNPTS*SGRSDRLK 147
G ED S KEG GG + GR DRLK
Sbjct: 81 GDWAEEDGSAKEGGGGGDEVEAGGGRDDRLK 111
>10_08_0161 +
15312986-15313160,15313250-15313557,15313676-15313754,
15313856-15314373
Length = 359
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 55 GGGDREDNSRKEGESGGGNPTS*SG-RSDRLKLRNLTTSLGSVQCVD 192
GGGD++D +KEG GGG+ G ++D+ K + S+ V D
Sbjct: 244 GGGDKKD--KKEGGGGGGDKKDAGGEKTDKDKSAAASASVAPVPLAD 288
>03_06_0599 + 34984869-34985319,34986581-34987563
Length = 477
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 107 PPPLSPSFRELSSLSPPPQRQW 42
PPP P RE S SPPPQ Q+
Sbjct: 407 PPPPPPHQRETPSPSPPPQPQF 428
>07_01_0862 - 7172083-7172931
Length = 282
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 110 FPPPLSPSFRELSSLSPPPQ 51
+PPPL P + L SPPPQ
Sbjct: 172 YPPPLPPKKKPLPPPSPPPQ 191
>07_01_0450 -
3395644-3395837,3396164-3396190,3396266-3396396,
3396612-3396691,3397283-3397345,3397588-3397697,
3398316-3398424,3398783-3398857,3399363-3399459,
3399622-3399683,3399966-3400026,3400330-3400469,
3400747-3400839,3401345-3401393,3401534-3401634,
3401723-3401816,3401904-3402139
Length = 573
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 179 TEPSEVVRLRSFKRSLLPLQLVGFPPPLSPSFRELSSLSPP 57
T + ++RL +R LLPL + PPP +P S +PP
Sbjct: 3 TAAAALLRLSRSRRPLLPLSSLRLPPP-APYHHHSHSQTPP 42
>09_04_0168 -
15295442-15295477,15295478-15295552,15295660-15295722,
15296095-15296319,15296421-15296562,15296678-15296839,
15298148-15298320,15300352-15300882
Length = 468
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 188 THCTEPSEVVRLRSFKRSLLPLQLVGFPPPLSPSF 84
T C PS V R+ K L P Q+ + P+ PSF
Sbjct: 295 TRCYCPSAEVSKRALKAGLQPSQIKVYGLPVRPSF 329
>07_01_0570 + 4228567-4228852,4229198-4229217
Length = 101
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 116 VGFPPPLSPSFRELSSLSPPP 54
+GF PPL P LS PPP
Sbjct: 47 IGFLPPLPPPHYPLSEFLPPP 67
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 55 GGGDREDNSRKEGESGGGNPTS*SGR 132
G D EDN + GGNPTS SG+
Sbjct: 672 GDDDEEDNIDETNSVLGGNPTSISGQ 697
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,796
Number of Sequences: 37544
Number of extensions: 296440
Number of successful extensions: 1070
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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