Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L23
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2 prot...    29   3.0  
AL031630-3|CAA20983.1|  140|Caenorhabditis elegans Hypothetical ...    28   5.2  
AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective spe...    27   9.1  

>Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical
           protein C56A3.7 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 26/86 (30%), Positives = 39/86 (45%)
 Frame = -3

Query: 539 TISHKAPPRLHDIDCQIRKFNELKENDCYMTDRDPAKNSQLY*TTTNSTAFKHPRTELLL 360
           T SHK P    + D  ++    +  +   M DRDP K+S  Y  T+    F  P +E   
Sbjct: 182 TTSHKPPNPEMEFDIGVKNIAPVLIHKMNMDDRDP-KDSAQYLNTSFFEVFNEP-SEQYH 239

Query: 359 GIL*SVQCDAYYKF*LY*IHRYKLLT 282
            I   V   ++  F +  I+ YK+LT
Sbjct: 240 SIA-CVWTLSFKIFEIVRIYSYKILT 264


>U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2
           protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 26/86 (30%), Positives = 39/86 (45%)
 Frame = -3

Query: 539 TISHKAPPRLHDIDCQIRKFNELKENDCYMTDRDPAKNSQLY*TTTNSTAFKHPRTELLL 360
           T SHK P    + D  ++    +  +   M DRDP K+S  Y  T+    F  P +E   
Sbjct: 182 TTSHKPPNPEMEFDIGVKNIAPVLIHKMNMDDRDP-KDSAQYLNTSFFEVFNEP-SEQYH 239

Query: 359 GIL*SVQCDAYYKF*LY*IHRYKLLT 282
            I   V   ++  F +  I+ YK+LT
Sbjct: 240 SIA-CVWTLSFKIFEIVRIYSYKILT 264


>AL031630-3|CAA20983.1|  140|Caenorhabditis elegans Hypothetical
           protein Y38H6C.3 protein.
          Length = 140

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 494 QIRKFNELKENDCYMTDRDPAKNSQ 420
           +++K NEL + D ++ D DPA+  Q
Sbjct: 88  ELKKQNELNKIDLWIADEDPARRKQ 112


>AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective
           spermatogenesis protein 8 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 128 PLQLVGFPPPLSPSFRELSSLSPPP 54
           P+QLV  P PL+P+     +  PPP
Sbjct: 50  PIQLVVQPTPLTPAITPCEAPPPPP 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,409,595
Number of Sequences: 27780
Number of extensions: 260670
Number of successful extensions: 828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)