Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L22
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 351 3e-97
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 351 3e-97
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 351 3e-97
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 82 3e-16
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 56 2e-08
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 56 2e-08
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 56 3e-08
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 55 4e-08
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 55 4e-08
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 55 4e-08
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 54 6e-08
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 54 1e-07
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 50 2e-06
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 50 2e-06
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 36 0.031
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 36 0.031
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 31 0.67
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 31 0.89
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 0.89
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 1.2
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 30 1.2
AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set (trithora... 30 1.2
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 30 1.6
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 30 1.6
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 2.1
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70208-11|CAA94144.1| 598|Caenorhabditis elegans Hypothetical p... 28 4.8
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 28 4.8
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 28 4.8
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 27 8.3
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 8.3
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 351 bits (862), Expect = 3e-97
Identities = 160/205 (78%), Positives = 177/205 (86%)
Frame = +1
Query: 10 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGK 189
F EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK
Sbjct: 133 FTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGK 192
Query: 190 CLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANIT 369
L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+T
Sbjct: 193 TLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVT 252
Query: 370 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIV 549
TEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI+
Sbjct: 253 TEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVII 312
Query: 550 LNHPGQISNGYTPVLDCHTGHIACK 624
+NHPGQISNGYTPVLDCHT HIACK
Sbjct: 313 MNHPGQISNGYTPVLDCHTAHIACK 337
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 351 bits (862), Expect = 3e-97
Identities = 160/205 (78%), Positives = 177/205 (86%)
Frame = +1
Query: 10 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGK 189
F EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK
Sbjct: 167 FTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGK 226
Query: 190 CLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANIT 369
L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+T
Sbjct: 227 TLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVT 286
Query: 370 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIV 549
TEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI+
Sbjct: 287 TEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVII 346
Query: 550 LNHPGQISNGYTPVLDCHTGHIACK 624
+NHPGQISNGYTPVLDCHT HIACK
Sbjct: 347 MNHPGQISNGYTPVLDCHTAHIACK 371
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 351 bits (862), Expect = 3e-97
Identities = 160/205 (78%), Positives = 177/205 (86%)
Frame = +1
Query: 10 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGK 189
F EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK
Sbjct: 167 FTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGK 226
Query: 190 CLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANIT 369
L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+T
Sbjct: 227 TLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVT 286
Query: 370 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIV 549
TEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI+
Sbjct: 287 TEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVII 346
Query: 550 LNHPGQISNGYTPVLDCHTGHIACK 624
+NHPGQISNGYTPVLDCHT HIACK
Sbjct: 347 MNHPGQISNGYTPVLDCHTAHIACK 371
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 82.2 bits (194), Expect = 3e-16
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 2/197 (1%)
Frame = +1
Query: 10 FEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEG 186
F+EI+ +++ +++K+G+NP + +VP SG G + + T W G
Sbjct: 269 FKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEG--NWY--------SG 318
Query: 187 KCLIEALDAILPP-ARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN 363
C IE +D +LP R + +R + + Y +GTV +G++E+G ++ G +V P
Sbjct: 319 PCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMPNK 376
Query: 364 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQV 543
+V + + V GDN+ F +K + EL+ G++ + G F A+V
Sbjct: 377 QPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGRV-FDAEV 435
Query: 544 IVLNHPGQISNGYTPVL 594
+VL H I++GY+ VL
Sbjct: 436 LVLEHRSIIASGYSCVL 452
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 56.0 bits (129), Expect = 2e-08
Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Frame = +1
Query: 10 FEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEG 186
F+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ +G
Sbjct: 328 FDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWY------------DG 372
Query: 187 KCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG-ILKPGTVVVFAPAN 363
CL+E +D+ + P P+D LR+ + DV K+ V G++E+G + K V + +
Sbjct: 373 PCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVT 432
Query: 364 ITT 372
T
Sbjct: 433 AAT 435
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 56.0 bits (129), Expect = 2e-08
Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Frame = +1
Query: 10 FEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEG 186
F+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ +G
Sbjct: 346 FDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWY------------DG 390
Query: 187 KCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG-ILKPGTVVVFAPAN 363
CL+E +D+ + P P+D LR+ + DV K+ V G++E+G + K V + +
Sbjct: 391 PCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVT 450
Query: 364 ITT 372
T
Sbjct: 451 AAT 453
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 55.6 bits (128), Expect = 3e-08
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Frame = +1
Query: 259 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPG 426
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G
Sbjct: 377 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCG 436
Query: 427 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHT 606
+ F +K + K++R+G V D K P F A+++VL+HP I Y +L H
Sbjct: 437 QSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML--HI 493
Query: 607 GHI 615
G +
Sbjct: 494 GSV 496
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 55.2 bits (127), Expect = 4e-08
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 172 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 345
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 285
Query: 346 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 486
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 286 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 55.2 bits (127), Expect = 4e-08
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 172 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 345
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 346 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 486
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 287 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 55.2 bits (127), Expect = 4e-08
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 172 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 345
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 346 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 486
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 287 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 54.4 bits (125), Expect = 6e-08
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Frame = +1
Query: 259 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPG 426
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G
Sbjct: 378 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVKCG 437
Query: 427 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHT 606
+ F +K + K++R+G V D K P F A+++VL+HP I Y +L H
Sbjct: 438 QSASFALKKIPKKDVRQGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML--HI 494
Query: 607 GHI 615
G +
Sbjct: 495 GSV 497
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 53.6 bits (123), Expect = 1e-07
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 17 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVNA 193
+S +S +SR+ TI RL LS TE TC P CHGSRDG L+ +KE L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETLPERP 210
Query: 194 LLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLE 292
R TPS A LT SVF + T+S LE
Sbjct: 211 SSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELE 243
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +1
Query: 193 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANI 366
LI+ALD++ P R +P+ I G GTV VG +E G+LK G V +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281
Query: 367 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 492
T +++ ++++E GD+ G + V ++RG AG
Sbjct: 282 QTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +1
Query: 193 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANI 366
LI+ALD++ P R +P+ I G GTV VG +E G+LK G V +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281
Query: 367 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 492
T +++ ++++E GD+ G + V ++RG AG
Sbjct: 282 QTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 38.3 bits (85), Expect = 0.004
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +1
Query: 259 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITT----EVKSVEMHHEALQEAVPG 426
++++Y + +G V G + G L G V+ P T V S+ +A+ PG
Sbjct: 407 IEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPG 466
Query: 427 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 558
+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 467 EAASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLCH 509
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 35.5 bits (78), Expect = 0.031
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +1
Query: 214 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEM 393
I P R + + + + I G GTV G V G+L+ T + F N VK++E
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 250
Query: 394 HHEALQEAVPGDNVGFNV 447
+ + + G F V
Sbjct: 251 WKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 35.5 bits (78), Expect = 0.031
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +1
Query: 214 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEM 393
I P R + + + + I G GTV G V G+L+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 394 HHEALQEAVPGDNVGFNV 447
+ + + G F V
Sbjct: 210 WKQRVGQVAAGARAAFLV 227
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 31.1 bits (67), Expect = 0.67
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Frame = -1
Query: 551 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPG-TASCRASWCISTDLT 375
ST T A+ + P ++ P + T +S + S R S +S D T
Sbjct: 4 STATVAIIQSEPSTSSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDST 63
Query: 374 SVVMLAGAKTTTVPGFR--IPVSTLPTGTVPIPPILY 270
V + +TVP + VST PT +PPI Y
Sbjct: 64 PVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 30.7 bits (66), Expect = 0.89
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 422 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 273
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 593
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 30.7 bits (66), Expect = 0.89
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 422 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 273
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 690
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -1
Query: 542 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVM 363
T A +AAP GGLF + T P T T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 362 LAGAKTTTVPGFRIPVSTLPT 300
+ T+T+P P PT
Sbjct: 528 TTTSTTSTLPK---PAEATPT 545
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = -1
Query: 551 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS--WCISTDL 378
++ T S AP GGLF + T P + T T +P T +T
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTT 506
Query: 377 TSVVMLAGAKTTTVPGF-RIPVSTLPTGTVPIP 282
+ G +TV +P +T T T+P P
Sbjct: 507 PATAATLGQTPSTVSATPSLPTTTSTTSTLPKP 539
Score = 27.5 bits (58), Expect = 8.3
Identities = 30/94 (31%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Frame = -1
Query: 560 G*FSTMTCAVKSAAPLGGLFFESPAT---*PRRNSL------TDTFLTLKPTLSPGTASC 408
G F + T A AAP GLF S T P SL T T + P S G
Sbjct: 387 GLFGSSTPAKTPAAPTAGLFGASSTTTTSAPATGSLFGTAPATTTATSAAPAASTGGLFG 446
Query: 407 RASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTL 306
+S L GA TTT P P L
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGL 480
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -1
Query: 494 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 336
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAXSSMYTWPQTY 163
Query: 335 PGFRIP 318
PG+ P
Sbjct: 164 PGYLPP 169
>AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 27
protein.
Length = 502
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = -3
Query: 297 YCSNTADFVYVLQGKTESLV-SGASRRKDGVEGLNKAFTFSLSFFTLN-QPSLEPWHFGG 124
Y + + F Y L ++ + A RRKD + +++ F N P L W G
Sbjct: 207 YRTISRQFCYFLLAIAKNKIYEAAQRRKDARNAMETPIFYNVPFNVANFTPKLYFWAVGV 266
Query: 123 RLQHVISVPARNGYESDGSRIV 58
V VP+ N DG+ ++
Sbjct: 267 VTTRVNMVPSENQVGEDGNPVI 288
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -1
Query: 494 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 336
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 335 PGFRIP 318
PG+ P
Sbjct: 164 PGYLPP 169
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -1
Query: 494 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 336
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 335 PGFRIP 318
PG+ P
Sbjct: 164 PGYLPP 169
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -1
Query: 494 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 336
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 335 PGFRIP 318
PG+ P
Sbjct: 164 PGYLPP 169
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 328 KPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 453
KPGT+ F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 410 CRASWCISTDLTSVVMLAGAKTTTV----PGFRIPVSTLPTGTVP 288
CR CI+T +T + + V PG+ +STLPT +P
Sbjct: 55 CRMEKCIATGMTMCKVQGNREKNKVRGYYPGYLPVISTLPTSVIP 99
>Z70208-11|CAA94144.1| 598|Caenorhabditis elegans Hypothetical
protein F54B11.11 protein.
Length = 598
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = -1
Query: 446 TLKPTLSPGTASCRASWCISTDLTSV---VMLAGAKTTTVPGFRIPVSTLPTGTVPIPPI 276
T +P LS T+S + +T +T+ ++ A TTT P P +T T PP+
Sbjct: 471 TTQPILSTMTSSTTKTLTSTTTITTTKANILTTTATTTTPPVTSAPATTFITPVPFTPPV 530
Query: 275 -----LYTSCRGRRRALSVG 231
+Y+S G + ++G
Sbjct: 531 TNSTTIYSSNTGSTLSTTIG 550
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -1
Query: 410 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 231
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 230 RAG 222
+ G
Sbjct: 273 KEG 275
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -1
Query: 410 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 231
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 230 RAG 222
+ G
Sbjct: 273 KEG 275
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.9 bits (59), Expect = 6.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 324 PKAWYCCRFCP 356
P W CCRFCP
Sbjct: 872 PPQWECCRFCP 882
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 116 WSRPP-KCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSV 253
WS P K GS+D W + R +N+ R S + R + +RLSV
Sbjct: 6 WSATPIKMVGSQDSWGTPPHYRSSLNSNYRDSPANSRNTSARSRLSV 52
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -3
Query: 294 CSNTADFVYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSL 145
CS T DF+ ++ ++ S + D V ++ ++ +++F+TL+ PSL
Sbjct: 80 CSTTNDFIINIEHSSDKKFSRLLQ--DLVSRDSRTYSKAINFYTLDDPSL 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.137 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,300,173
Number of Sequences: 27780
Number of extensions: 374426
Number of successful extensions: 1261
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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