Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L21
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    27   2.6  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   6.0  
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    25   7.9  

>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 318 FFKNSRGNDVVFVGNNKYRINKTRG 392
           +  N   NDVV + N +YRI K  G
Sbjct: 15  YISNLFDNDVVCINNERYRIQKLLG 39


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 467 LGIDSVNLRSTSKPLMSTASPYSFCTTCFINPVFVIADKDNIIASTVLE 321
           L  + V  +S S    ST SP+S   + ++NP+   +DK   + S+ LE
Sbjct: 501 LSTNHVKTKSRSAHNNST-SPFSTAVSSWLNPLRYPSDKSPRVISSYLE 548


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 361 ITNTGLIKHVVQKLYGDAVLMRGLDVERRFTLSIPR 468
           +T+  LI    Q+ Y D V  +GLD      LSIPR
Sbjct: 75  VTDACLIVKDSQQTYQDLVEQQGLDEVITKVLSIPR 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,047
Number of Sequences: 5004
Number of extensions: 44032
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)