Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L21
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711...    31   0.49 
01_01_1214 - 9793854-9794003,9795418-9795456,9795604-9795702,979...    31   0.49 
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    29   3.5  
07_03_0633 + 20120560-20123464,20123608-20123672                       27   8.0  
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128...    27   8.0  

>03_05_0328 -
           23170019-23170168,23170865-23170903,23171043-23171141,
           23171214-23171342,23171915-23172061,23172959-23173089,
           23173938-23174157,23174294-23174387,23174469-23174581,
           23174727-23174861,23175231-23175335,23175440-23175544,
           23176240-23176327,23176415-23176536,23176611-23176670,
           23177434-23177529,23177620-23177772,23177865-23177951,
           23179179-23179246,23179603-23179726,23180235-23180330,
           23180430-23180539,23180647-23180761,23181622-23181699,
           23181843-23181908,23182203-23182363,23182781-23183099
          Length = 1069

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +1

Query: 391 VQKLYGDAVLMRGLDVERRFTLSIPRSCTFMTSILAFNKL 510
           V +LYGD  L   LD+  + +LS+P     ++ ILAF KL
Sbjct: 849 VFELYGDRALADALDISLKMSLSVP-----LSDILAFKKL 883


>01_01_1214 -
           9793854-9794003,9795418-9795456,9795604-9795702,
           9795779-9795907,9796473-9796619,9797513-9797643,
           9798497-9798716,9798858-9798951,9799021-9799133,
           9799799-9799903,9800008-9800112,9800762-9800849,
           9800933-9801054,9801130-9801189,9802313-9802408,
           9802506-9802658,9802752-9802838,9803995-9804062,
           9804429-9804552,9805057-9805152,9805250-9805359,
           9805459-9805573,9806877-9806942,9807260-9807420,
           9807927-9808167
          Length = 972

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +1

Query: 391 VQKLYGDAVLMRGLDVERRFTLSIPRSCTFMTSILAFNKL 510
           V +LYGD  L   LD+  + +LS+P     ++ ILAF KL
Sbjct: 752 VFELYGDRALADALDISLKMSLSVP-----LSDILAFKKL 786


>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
 Frame = +1

Query: 112 ITAPGLSNSKAFIPIIVTNSKGSKTLIYQGNRYRQNGKKEGAKL-RWRCTTHAKYGCKAI 288
           + AP  S++ A     V NS  +   +  G  Y Q+ +    +  + R  T+  YG    
Sbjct: 15  VAAPAASSAAASNTFHVLNSGSAAAAVAAGRAYVQSPRATALRSPQVRAITN--YGMFPT 72

Query: 289 IHTIAGRIRFFSRTVEAMMLSLSAITNTGLIKHVVQKL 402
               A R     RT+      L+  T T    H++Q+L
Sbjct: 73  TGASAARTAMAGRTINGGASMLTTTTTTTTPPHLIQQL 110


>07_03_0633 + 20120560-20123464,20123608-20123672
          Length = 989

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 476  VHDLGIDSVNLRSTSKPLMSTASPYSFCTTCFIN 375
            VH+L +D     ST   ++  +  Y + ++CF+N
Sbjct: 946  VHELNLDESKAISTELLVLKLSEGYHYLSSCFLN 979


>04_01_0123 -
           1283197-1283292,1283330-1284439,1284790-1285177,
           1285523-1287609
          Length = 1226

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
 Frame = +1

Query: 1   HEEGRKAYFLC*VFLKTQVKCTQVKNHEMDTFSDTRIITAP-------GLSNSKAFIPII 159
           H+  +     C VFL  + +    K   +   S TR++  P        LS+ K F+  I
Sbjct: 67  HKTRKHTLQACWVFLNVRAEIRACKERGIQRISPTRVVYCPIHKTKNHDLSSCKVFLSAI 126

Query: 160 VTNSKGSKTLIYQGNRYRQNGKKEGA 237
              S  S   I      R NGK++GA
Sbjct: 127 KALSPKSYVPI------RDNGKEQGA 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,686,280
Number of Sequences: 37544
Number of extensions: 254101
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)