Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L21
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal enha...    31   0.44 
U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal enha...    31   0.44 
AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal en...    31   0.44 
U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.        29   2.3  
AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior phar...    29   2.3  
U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily ass...    28   4.1  
Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    28   5.4  
AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    27   7.2  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    27   7.2  
Z81115-1|CAB03291.1|  365|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z75956-4|CAN99718.1|  252|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z75956-3|CAJ90494.1|  217|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z75956-2|CAJ90493.2|  384|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z75956-1|CAB00128.2|  489|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    27   9.5  
D83738-1|BAA12091.1|  366|Caenorhabditis elegans aldolase Ce1 pr...    27   9.5  

>U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform b protein.
          Length = 169

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 148 IPIIVTNSKGSKTLIYQGNRYR--QNGKKEGAKLRWRCTTHAK 270
           IP IVT+ KG + L+YQG RY   Q   +   K  WRC    K
Sbjct: 50  IPQIVTSFKGYQKLMYQGYRYNIYQIAPERNFK-SWRCVCAKK 91


>U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform a protein.
          Length = 427

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 148 IPIIVTNSKGSKTLIYQGNRYR--QNGKKEGAKLRWRCTTHAK 270
           IP IVT+ KG + L+YQG RY   Q   +   K  WRC    K
Sbjct: 50  IPQIVTSFKGYQKLMYQGYRYNIYQIAPERNFK-SWRCVCAKK 91


>AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal
           enhancer binding protein-1 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 148 IPIIVTNSKGSKTLIYQGNRYR--QNGKKEGAKLRWRCTTHAK 270
           IP IVT+ KG + L+YQG RY   Q   +   K  WRC    K
Sbjct: 48  IPQIVTSFKGYQKLMYQGYRYNIYQIAPERNFK-SWRCVCAKK 89


>U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.
          Length = 515

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
 Frame = +1

Query: 151 PIIVTNSKGSKTLIYQGNRYRQN--GKK------EGAKLRWRCTTHAKYGCKA 285
           PI++  S+G    +   N    N  GK+        AKL W C+TH    C A
Sbjct: 113 PIVIETSRGFNVTVQLRNLCSSNYHGKRCNRYCIANAKLHWECSTHGVRRCSA 165


>AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior pharynx
           in excess protein1 protein.
          Length = 515

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
 Frame = +1

Query: 151 PIIVTNSKGSKTLIYQGNRYRQN--GKK------EGAKLRWRCTTHAKYGCKA 285
           PI++  S+G    +   N    N  GK+        AKL W C+TH    C A
Sbjct: 113 PIVIETSRGFNVTVQLRNLCSSNYHGKRCNRYCIANAKLHWECSTHGVRRCSA 165


>U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 127 protein.
          Length = 862

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 145 FIPIIVTNSKGSKTLIYQGNRYRQNGKKEGAKLRWRC 255
           F+P++       +TLIY+G+   Q GKK G+K    C
Sbjct: 366 FMPLLHPRKPTHRTLIYRGDLRMQEGKK-GSKADVHC 401


>Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical
           protein F23B12.7 protein.
          Length = 953

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 99  RHTHNHCTRPVQLKGIHPNNSNK*QRFEDVDLPRESIQAEREEG 230
           +   N   +PV  K  +P NSN+ ++F+ + L ++ I  + +EG
Sbjct: 57  KQAQNGAAKPVAHKPANPENSNQKRQFKKI-LGQDGILVKHQEG 99


>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -1

Query: 512 SNLLNASMLVIKVHDLGIDSVNLRSTSKPLMSTASPYSFCTTCFINPVFVIADKDNIIAS 333
           +N+LN S + IK++ +   S  L S +    +    Y F  +CF + + V+   +NI+AS
Sbjct: 183 TNVLNVS-IAIKLYLISKSSNLLSSRASKTRNKNRVYLFLQSCFQDWIAVLVILNNILAS 241


>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 396 KTIWRCSTHERFGCRAKIHT--VNSKIVYFYDEH 491
           K  WRC       C+A++HT  V  KI+ F  EH
Sbjct: 159 KYFWRCEYKNT--CKARMHTDIVTEKILTFIHEH 190


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 396 KTIWRCSTHERFGCRAKIHT--VNSKIVYFYDEH 491
           K  WRC       C+A++HT  V  KI+ F  EH
Sbjct: 159 KYFWRCEYKNT--CKARMHTDIVTEKILTFIHEH 190


>Z81115-1|CAB03291.1|  365|Caenorhabditis elegans Hypothetical
           protein T05D4.1 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 121 PGLSNSKAFIPIIVTNSKGSKTLIYQGNRYRQNGKKEGAKL-RWRC 255
           PG+   K  +P+  T  +G+   +   N      KK+GA+  +WRC
Sbjct: 105 PGIKVDKGVVPMAGTIGEGTTQGLDDLNARCAQYKKDGAQFAKWRC 150


>Z75956-4|CAN99718.1|  252|Caenorhabditis elegans Hypothetical
           protein R31.2d protein.
          Length = 252

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 180 EDVDLPRESIQAEREEGRCKTP 245
           ED+D+P+     E+EE R  TP
Sbjct: 56  EDIDIPKNDDHEEQEEPRAPTP 77


>Z75956-3|CAJ90494.1|  217|Caenorhabditis elegans Hypothetical
           protein R31.2c protein.
          Length = 217

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 180 EDVDLPRESIQAEREEGRCKTP 245
           ED+D+P+     E+EE R  TP
Sbjct: 21  EDIDIPKNDDHEEQEEPRAPTP 42


>Z75956-2|CAJ90493.2|  384|Caenorhabditis elegans Hypothetical
           protein R31.2b protein.
          Length = 384

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 180 EDVDLPRESIQAEREEGRCKTP 245
           ED+D+P+     E+EE R  TP
Sbjct: 188 EDIDIPKNDDHEEQEEPRAPTP 209


>Z75956-1|CAB00128.2|  489|Caenorhabditis elegans Hypothetical
           protein R31.2a protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 180 EDVDLPRESIQAEREEGRCKTP 245
           ED+D+P+     E+EE R  TP
Sbjct: 293 EDIDIPKNDDHEEQEEPRAPTP 314


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 476 VHDLGIDSVNLRSTSKPLMST 414
           VH+LGI S NL  T K ++ST
Sbjct: 908 VHELGISSKNLEKTRKFVLST 928


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 476 VHDLGIDSVNLRSTSKPLMST 414
           VH+LGI S NL  T K ++ST
Sbjct: 908 VHELGISSKNLEKTRKFVLST 928


>D83738-1|BAA12091.1|  366|Caenorhabditis elegans aldolase Ce1
           protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 121 PGLSNSKAFIPIIVTNSKGSKTLIYQGNRYRQNGKKEGAKL-RWRC 255
           PG+   K  +P+  T  +G+   +   N      KK+GA+  +WRC
Sbjct: 105 PGIKVDKGVVPMAGTIGEGTTQGLDDLNARCAQYKKDGAQFAKWRC 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,526,109
Number of Sequences: 27780
Number of extensions: 249373
Number of successful extensions: 655
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)