Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L20
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    27   2.4  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    26   4.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   5.6  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 39  LVPTCSTLVHYFFCNSEII*ICF*NYRNTFL 131
           +VP CST+VH   C + +I I   + RNT L
Sbjct: 77  IVPDCSTIVHIALCAAYLIVI---DSRNTVL 104


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 431 NYITSLWKLYRFFLRVEWVILLRKPL 508
           N IT    + RF  R  W I+ RKPL
Sbjct: 63  NRITETTDVMRFLCRELWPIVFRKPL 88


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 189 ALEPSKNRFFFCTNVFLNYPRMCSYNFRSKFKLFRSYKRNSEQAS 55
           +L P +N        F N P + S ++  ++ +F  YKR    A+
Sbjct: 859 SLSPIQNAGSAMLPSFSNLPNLYSSSYLEEWNVFAQYKRRESNAT 903


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,580
Number of Sequences: 5004
Number of extensions: 25353
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)