Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L20
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098992-9|AAC67451.1|  425|Caenorhabditis elegans Hypothetical ...    33   0.18 
Z83114-1|CAB63234.1|  549|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    29   2.9  
Z71177-7|CAI46554.1|  351|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z81497-6|CAB04082.2|  604|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z75953-5|CAB00102.2|  604|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF098992-9|AAC67451.1|  425|Caenorhabditis elegans Hypothetical
           protein F53C3.11 protein.
          Length = 425

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -3

Query: 512 KIMVFSTKSPIRLAKKIYTISINS*Y--NYRNYIKIHLKLNNDVIVRDFILSIDNNLNYF 339
           K +++++ +  +  K +  I +N  +  N+RN  +IH  L ++ I+ D +L   NN+  F
Sbjct: 81  KFILYNSSNFFKFLKSVAKIKVNQLFFGNFRNVPEIHKLLIHNTIMDDLVLEQVNNMEIF 140


>Z83114-1|CAB63234.1|  549|Caenorhabditis elegans Hypothetical
           protein K09B11.2 protein.
          Length = 549

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 28  RSGRSYLPARRLFTISFVTPK*FEFASEIIGT 123
           +SG SY  AR  F +  V PK +E   E+IGT
Sbjct: 76  KSGPSYKHARLKFRLKEVAPKNYEKIMEMIGT 107


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 180 PSKNRFFFCTNVFLNYPRMCS 118
           P KNRFFFC N  LN+P   S
Sbjct: 874 PLKNRFFFCEN--LNFPGFLS 892


>Z71177-7|CAI46554.1|  351|Caenorhabditis elegans Hypothetical
           protein AC3.10 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 395 YSVLNVFLYNFYNYITSLWKLYRFFLRVEWVILLRKPLFYINNY 526
           Y +   FL  +Y  +TSL    R+F+  +W   L K LFY+ ++
Sbjct: 202 YIIYTSFLVYWY-LLTSLEGAVRYFINQQWTDELGKFLFYLFSF 244


>Z81497-6|CAB04082.2|  604|Caenorhabditis elegans Hypothetical
           protein F10C2.3 protein.
          Length = 604

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 165 FFFCTNVFLNYPRMCSYNFRSKFKLFRSYKRNSEQASSR 49
           FF CT VFL      S       K  RS  R  + +SS+
Sbjct: 11  FFLCTTVFLFPDLFASSTISRNLKTRRSVARQKQNSSSK 49


>Z75953-5|CAB00102.2|  604|Caenorhabditis elegans Hypothetical
           protein F10C2.3 protein.
          Length = 604

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 165 FFFCTNVFLNYPRMCSYNFRSKFKLFRSYKRNSEQASSR 49
           FF CT VFL      S       K  RS  R  + +SS+
Sbjct: 11  FFLCTTVFLFPDLFASSTISRNLKTRRSVARQKQNSSSK 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,925,187
Number of Sequences: 27780
Number of extensions: 135810
Number of successful extensions: 349
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)