Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L19
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    27   1.4  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    25   3.1  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    24   7.2  

>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 18  DTSPAHRPNLHTSLNIKRNMSARNLSNFAESAMAVNRVIQ 137
           DTSP+ R N H  L+     S    SN   +AM+ N  I+
Sbjct: 401 DTSPSIRTNCHHCLDDGMQASGIVQSNLTSAAMSNNSAIR 440


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 21  TSPAHRPNLHTSL-NIKRNMSARNLSNFAESAMAVNRVIQQHFSMNYSYMERP 176
           TS A   NL  +L N  R  S+    NF +S M      + H +    Y++RP
Sbjct: 179 TSLADTLNLDFALINTDRQRSSHFSQNFEDSIMDETEATETHVTNCSVYLDRP 231


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +3

Query: 6    EGMADTSPAHRPNLHTSLNIKRNMSARNLSNFAESAMAVNRVIQQ 140
            E + ++S +   + HTSL  + N S RN+     ++     ++++
Sbjct: 914  EALLESSLSDLQSKHTSLESQYNYSLRNIEQLQAASKLAEEMVER 958


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,059,448
Number of Sequences: 5004
Number of extensions: 14193
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)