Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L19
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878 27 0.76
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 29 1.7
01_07_0026 + 40576826-40577114,40577210-40577354,40577736-405778... 28 2.2
06_02_0072 + 11152988-11153102,11153581-11153705,11153860-111540... 28 3.0
05_02_0109 + 6689176-6689315,6689438-6689561 28 3.0
06_03_0338 - 19685656-19686282 27 3.9
03_01_0639 - 4678993-4679034,4679880-4679945,4680040-4680150,468... 27 3.9
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 27 3.9
12_01_0814 - 7483597-7483818,7484136-7484276,7484370-7484444,748... 27 5.2
07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326 27 5.2
01_07_0259 - 42353992-42354111,42354255-42354385,42355484-423555... 27 5.2
08_01_0057 - 383603-384256 26 9.1
05_03_0280 - 11553011-11553052,11553810-11553872,11554304-115546... 26 9.1
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 26 9.1
>05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878
Length = 402
Score = 26.6 bits (56), Expect(2) = 0.76
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 78 SARNLSNFAESAMAVNRVIQQHFSMNY--SYMERPAAVRCTKSCYTADGDGDGD 233
S + N A +AV IQ++ Y SY + V + DGDGDGD
Sbjct: 279 SGSAILNGAARCVAVYHGIQKNCKAGYAISYQDVKTFVDTALANLPGDGDGDGD 332
Score = 21.8 bits (44), Expect(2) = 0.76
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +3
Query: 213 DGDGDGDE 236
DGDGDGD+
Sbjct: 334 DGDGDGDD 341
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 387 LISLG*RASLAGMAVVSLSAR-GEVRRLWAARG 292
L+ +G RA+ AG+ V AR GE RR W RG
Sbjct: 138 LVGVGRRAAGAGLQAVVPEARGGERRRAWRRRG 170
>01_07_0026 +
40576826-40577114,40577210-40577354,40577736-40577801,
40578012-40578021
Length = 169
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 162 YMERPAAVRCTKSCYTADGDGDGDECAPLGLSP 260
Y ++ A V + DGD DGDEC + +P
Sbjct: 67 YCQKSATVDAIVADADGDGDSDGDECVRITETP 99
>06_02_0072 +
11152988-11153102,11153581-11153705,11153860-11154004,
11154219-11154284,11154418-11154540,11154839-11154961,
11156065-11156193,11156510-11156632,11156737-11156838,
11156943-11157065,11157169-11157270,11157370-11157492,
11157791-11157913,11158209-11158331,11158633-11158761,
11160210-11161039
Length = 867
Score = 27.9 bits (59), Expect = 3.0
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Frame = +3
Query: 15 ADTSPAHRPNLH-TSLNIKRNMSARNLSNFAESAMAVNRVIQQH-----FSMNYSYMERP 176
A T+PA R + TS+ M+ S+ +E A A V+ H +++ Y + +P
Sbjct: 726 AATTPARRGRYNVTSVRELSAMAGSGSSSSSEPAPAA--VVACHDLTYPYAVFYCHSTKP 783
Query: 177 AAVRCTK--SCYTADGDGDGDECAP 245
A + T DGDG+G+ +P
Sbjct: 784 TAAYAVTLVAATTGDGDGEGEAASP 808
>05_02_0109 + 6689176-6689315,6689438-6689561
Length = 87
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 213 DGDGDGDECAPLG 251
DGDGDG +C PLG
Sbjct: 10 DGDGDGCKCRPLG 22
>06_03_0338 - 19685656-19686282
Length = 208
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 87 CAQTYCV*C*ATCVD-WGGVRATCPPCPR 4
CA T+ V C+D W G ATCP C R
Sbjct: 160 CAHTFHV----ACIDMWLGSHATCPVCRR 184
>03_01_0639 -
4678993-4679034,4679880-4679945,4680040-4680150,
4680266-4680304,4680394-4680493,4680597-4680712,
4680897-4681035,4681151-4681222,4681331-4681434,
4681616-4681867
Length = 346
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 171 RPAAVRCTKSCYTADGDGDGDE 236
RP AV+C+ + A G+G GD+
Sbjct: 37 RPRAVQCSATATAASGEGAGDD 58
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 186 RCTKSCYTADGDGDGD 233
RC+ S TADG GDGD
Sbjct: 61 RCSPSGATADGSGDGD 76
>12_01_0814 -
7483597-7483818,7484136-7484276,7484370-7484444,
7484706-7484882,7485530-7485685,7485781-7485864,
7486589-7486661,7487744-7487946,7488046-7488124,
7488326-7488464,7488559-7488646
Length = 478
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 33 HRPNLHTSLNIKRNMSARNLSNFAESAMAVNRVIQQH 143
H+P LH L IK N + R +N A +A + ++H
Sbjct: 365 HQPKLHGGLVIKHNANQRYATN-AVTAFIFREIAERH 400
>07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326
Length = 386
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 165 MERPAAVRCTKSCYTADGDGDGDE 236
+ERP RC SC+ GDG DE
Sbjct: 74 VERPPRGRCG-SCFNGGGDGSDDE 96
>01_07_0259 -
42353992-42354111,42354255-42354385,42355484-42355571,
42356439-42357282,42357354-42357934,42358962-42359159
Length = 653
Score = 27.1 bits (57), Expect = 5.2
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -1
Query: 384 ISLG*RASLAGMAVVSLSARGEVRRLWAARGDAGAVA 274
+ LG ++A MAV +L R RR+ AARG A A A
Sbjct: 381 VGLGHALNVASMAVAALVER---RRIGAARGRAAAAA 414
>08_01_0057 - 383603-384256
Length = 217
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 8 GHGGHVARTPPQSTHV 55
GHGGH R PP ++ V
Sbjct: 26 GHGGHAKRAPPPASPV 41
>05_03_0280 -
11553011-11553052,11553810-11553872,11554304-11554666,
11554805-11554944,11556267-11556336
Length = 225
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 124 FTAIADSAKLDRLRADILRLMLSDVCRLG 38
FT+ A++ DR+R+ I ++M DV +G
Sbjct: 164 FTSFANAVHNDRVRSPIKKIMRFDVIEMG 192
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +3
Query: 171 RPAAVRCTKSCYTADGDGDGDECAPLGLSPP 263
+PA C C +DG G C P PP
Sbjct: 149 KPAVPPCAGGCSISDGGACGASCKPPPPPPP 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,522,903
Number of Sequences: 37544
Number of extensions: 136984
Number of successful extensions: 677
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -