Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L19
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-11|AAK21390.1|  329|Caenorhabditis elegans Hypothetical p...    27   4.6  
AL032623-12|CAA21517.1|  147|Caenorhabditis elegans Hypothetical...    27   6.1  
U39742-8|AAP68951.1|  392|Caenorhabditis elegans Drosophila disc...    26   8.1  
U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila disc...    26   8.1  
AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein...    26   8.1  
AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like pr...    26   8.1  

>U88173-11|AAK21390.1|  329|Caenorhabditis elegans Hypothetical
           protein F46F11.8 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 84  RNLSNFAESAMAVNRVIQQHFSMNYSYMERPAAVRCT 194
           RN+S   +  MAV   + +HF     +++R +  +CT
Sbjct: 186 RNISPITQLVMAVRDHVMEHFDKENPHLKRFSCRQCT 222


>AL032623-12|CAA21517.1|  147|Caenorhabditis elegans Hypothetical
           protein Y43F8B.12 protein.
          Length = 147

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 3   HEGMADTSPAHRPNLHTSLNIKRNMSARNLSNFAESAMAVNRVIQQ 140
           + G    + AH  N HT+    +NM  +   N  +S   +N +I++
Sbjct: 59  NSGKLSKAWAHAQNCHTNFYELKNMKKKLKQNILKSVSEMNNIIKK 104


>U39742-8|AAP68951.1|  392|Caenorhabditis elegans Drosophila discs
           large homologprotein 1, isoform b protein.
          Length = 392

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 102 AESAMAVNRVIQQHFSMNYSYMERPAAVRCTKS 200
           AE  M V RVI++     +SY  RPAA   T +
Sbjct: 23  AEKNMEVRRVIERLEGGPHSYNSRPAATTSTSN 55


>U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila discs
           large homologprotein 1, isoform a protein.
          Length = 967

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 102 AESAMAVNRVIQQHFSMNYSYMERPAAVRCTKS 200
           AE  M V RVI++     +SY  RPAA   T +
Sbjct: 69  AEKNMEVRRVIERLEGGPHSYNSRPAATTSTSN 101


>AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein
           DLG-1 protein.
          Length = 967

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 102 AESAMAVNRVIQQHFSMNYSYMERPAAVRCTKS 200
           AE  M V RVI++     +SY  RPAA   T +
Sbjct: 69  AEKNMEVRRVIERLEGGPHSYNSRPAATTSTSN 101


>AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like
           protein DLG-1 protein.
          Length = 967

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 102 AESAMAVNRVIQQHFSMNYSYMERPAAVRCTKS 200
           AE  M V RVI++     +SY  RPAA   T +
Sbjct: 69  AEKNMEVRRVIERLEGGPHSYNSRPAATTSTSN 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,325,948
Number of Sequences: 27780
Number of extensions: 95731
Number of successful extensions: 348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)