Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L17
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 91 7e-20
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 91 7e-20
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 28 0.40
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 1.2
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 2.1
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 25 3.7
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 3.7
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 24 6.5
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 21 8.0
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 8.6
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 90.6 bits (215), Expect = 7e-20
Identities = 45/73 (61%), Positives = 57/73 (78%)
Frame = +3
Query: 150 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 329
IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRFRKA+C IVERLTNSL
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75
Query: 330 MMHGRNNGKKLMA 368
MM+GRNNGKKL+A
Sbjct: 76 MMNGRNNGKKLLA 88
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 90.6 bits (215), Expect = 7e-20
Identities = 45/73 (61%), Positives = 57/73 (78%)
Frame = +3
Query: 150 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 329
IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRFRKA+C IVERLTNSL
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75
Query: 330 MMHGRNNGKKLMA 368
MM+GRNNGKKL+A
Sbjct: 76 MMNGRNNGKKLLA 88
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 28.3 bits (60), Expect = 0.40
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 209 LQRHVRYLNVITTPSPKKFDFGNISRLW 126
LQ+H++YL + P P F + SR W
Sbjct: 31 LQKHLKYLTKMLDPLPSPFTVLDASRAW 58
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 26.6 bits (56), Expect = 1.2
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 135 ADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 272
ADI + FGR ++++++ + I+V+EKYAK P R A
Sbjct: 9 ADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 2.1
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 108 VDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYL 248
V+NM + +P I KL + + + ++ L ++ ++EKYA+YL
Sbjct: 854 VENMNIKEPTFI---KLMKKVNILESRLLSNPLHNFSELEEKYAEYL 897
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 3.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 245 IFCILLFYRNIILQRHVRYLN 183
I C+L+ RNI L+ + YLN
Sbjct: 487 IICLLMQNRNISLKSQISYLN 507
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 3.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 79 KKSPTRAAWLWTTCHYHSRLIF 144
K +P R LW +CH++ +I+
Sbjct: 256 KVAPGRYECLWLSCHFYYSIIY 277
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 24.2 bits (50), Expect = 6.5
Identities = 7/22 (31%), Positives = 17/22 (77%)
Frame = +3
Query: 192 SDMSLQDYISVKEKYAKYLPHS 257
SDM ++ + ++K +Y+K +P++
Sbjct: 706 SDMGMEKFFNIKCRYSKLVPNT 727
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 21.0 bits (42), Expect(2) = 8.0
Identities = 7/25 (28%), Positives = 13/25 (52%)
Frame = +1
Query: 103 WLWTTCHYHSRLIFPKSNFLGDGVV 177
W + H ++FP S + +G+V
Sbjct: 257 WRCSDFLLHQNILFPPSTLVQNGIV 281
Score = 21.0 bits (42), Expect(2) = 8.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 202 LCRIIFR*KRSMQNIYHILLAGTLTNDSVKLSALLW 309
L R +FR RS N L + ++S+ S LW
Sbjct: 311 LRRFVFRSPRSASNYEFSNLRRLMVSESLYSSKSLW 346
>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 212 ILQRHVRYLNVITTPSPKKFDFGNISRL 129
IL++ + +I S +KFDF N R+
Sbjct: 3 ILEKKNIFFKIIHIKSSRKFDFSNAIRI 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,142
Number of Sequences: 5004
Number of extensions: 31177
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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