Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L17
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 124 2e-29
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 118 1e-27
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 30 0.65
03_01_0548 + 4099386-4099847,4100435-4101316 28 2.0
03_01_0547 + 4093196-4093657,4094267-4095148 28 2.0
03_01_0544 + 4082528-4082989,4083585-4084466 28 2.0
03_01_0543 + 4076981-4077442,4078145-4079026 28 2.0
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 27 3.5
10_02_0110 - 5371536-5372882 27 6.1
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 27 6.1
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 27 6.1
07_03_0220 + 15323423-15324022,15324118-15324258,15324391-15324501 26 8.1
05_03_0329 - 12473778-12473956,12474190-12474250 26 8.1
01_01_0115 - 856957-858055,858479-858538,858802-859583 26 8.1
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 124 bits (299), Expect = 2e-29
Identities = 57/75 (76%), Positives = 66/75 (88%), Gaps = 1/75 (1%)
Frame = +3
Query: 147 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 323
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 324 SLMMHGRNNGKKLMA 368
SLMMHGRNNGKK+MA
Sbjct: 70 SLMMHGRNNGKKIMA 84
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 118 bits (285), Expect = 1e-27
Identities = 54/74 (72%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
Frame = +3
Query: 150 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 326
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 327 LMMHGRNNGKKLMA 368
LMMHGRNNGKK+MA
Sbjct: 72 LMMHGRNNGKKIMA 85
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 29.9 bits (64), Expect = 0.65
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +3
Query: 78 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 251
+E+ G MVV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 214 QEIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 116 VVHNHAARVGDFFGPVLLSHISHFYSQF 33
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 116 VVHNHAARVGDFFGPVLLSHISHFYSQF 33
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 116 VVHNHAARVGDFFGPVLLSHISHFYSQF 33
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 116 VVHNHAARVGDFFGPVLLSHISHFYSQF 33
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 182 RSSIGHVFAGLYFGKREVCKIFTTFCWQVRSQTIP*SSVPYCG 310
R+S+G GL FG+ V + TT Q S +IP VP G
Sbjct: 19 RASLGKPVKGLGFGRERVPRTATTITCQAAS-SIPADRVPDMG 60
>10_02_0110 - 5371536-5372882
Length = 448
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 72 WTEEVADAGGMVVDNMPLPQPADIPEIKL 158
W+ + DA ++ ++PLPQP +P + L
Sbjct: 81 WSRVITDAAVLLCRSLPLPQPV-LPRLAL 108
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 204 LQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERL 317
LQD+ V E YAKY P A A ++ A P+ R+
Sbjct: 122 LQDFKKVNEIYAKYFPAPAP--ARSTYQVAALPLNARI 157
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +3
Query: 219 SVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLM 332
S+K++Y + L G + CP+ R NS++
Sbjct: 1445 SLKQRYVRRLGFETGHIVDPDLGELLCPVCRRFANSIL 1482
>07_03_0220 + 15323423-15324022,15324118-15324258,15324391-15324501
Length = 283
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 78 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSD 197
E +AGG V + P PA + +I GRWS Y +++
Sbjct: 4 EADVEAGG--VRDYEDPPPAPLVDIDELGRWSLYRAVIAE 41
>05_03_0329 - 12473778-12473956,12474190-12474250
Length = 79
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 103 WLWTTCHYHSRLIFPKSNFLGDGVVMTFKYRTCL 204
W W C+ + +F + DG V F+ R C+
Sbjct: 25 WNWIICYSSASSVFAALDKDNDGKVSAFELRGCM 58
>01_01_0115 - 856957-858055,858479-858538,858802-859583
Length = 646
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 201 SLQDYISVKEKYAKYLPHSAGRY 269
+LQ ++SV+ +A +PH+AGR+
Sbjct: 12 ALQVFVSVQFVFAVLVPHAAGRH 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,855,854
Number of Sequences: 37544
Number of extensions: 198148
Number of successful extensions: 522
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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