Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L17
(369 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 25 0.38
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 24 0.50
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 24 0.50
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 23 0.87
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 23 0.87
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 23 0.87
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 23 0.87
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 23 0.87
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 21 3.5
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 21 3.5
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.38
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -2
Query: 116 VVHNHAARVGDFFGPVLLSHISHFYSQFTN 27
+V NH ++ + + PVL H +H +F +
Sbjct: 345 IVLNHPGQISNGYTPVLDCHTAHIACKFAD 374
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 24.2 bits (50), Expect = 0.50
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 116 VVHNHAARVGDFFGPVLLSHISHFYSQF 33
+V NH ++ + + PVL H +H +F
Sbjct: 345 IVLNHPGQISNGYTPVLDCHTAHIACKF 372
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 24.2 bits (50), Expect = 0.50
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 116 VVHNHAARVGDFFGPVLLSHISHFYSQF 33
+V NH ++ + + PVL H +H +F
Sbjct: 56 IVLNHPGQISNGYTPVLDCHTAHIACKF 83
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 23.4 bits (48), Expect = 0.87
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 225 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKL 362
+ Y KY S R + R R + I+ L+N + + NN KKL
Sbjct: 53 ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKL 100
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 23.4 bits (48), Expect = 0.87
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 225 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKL 362
+ Y KY S R + R R + I+ L+N + + NN KKL
Sbjct: 53 ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKL 100
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 23.4 bits (48), Expect = 0.87
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 225 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKL 362
+ Y KY S R + R R + I+ L+N + + NN KKL
Sbjct: 53 ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKL 100
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 23.4 bits (48), Expect = 0.87
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 225 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKL 362
+ Y KY S R + R R + I+ L+N + + NN KKL
Sbjct: 53 ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKL 100
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 23.4 bits (48), Expect = 0.87
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 225 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKL 362
+ Y KY S R + R R + I+ L+N + + NN KKL
Sbjct: 286 ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKL 333
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 21.4 bits (43), Expect = 3.5
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -1
Query: 300 GTELYGIVCERTCQQNVVNILHTSLL 223
G + GI+C++T + ++LH +L
Sbjct: 94 GELVMGILCKKTLGTSAGSLLHICML 119
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.4 bits (43), Expect = 3.5
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 224 YRNIILQRHVRYLNVITTPSPKKFDFGN 141
Y N L ++ Y+ I P P +GN
Sbjct: 321 YNNKKLYYNINYIEQIPVPVPVPIYYGN 348
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,284
Number of Sequences: 438
Number of extensions: 2200
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8804355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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