Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L16
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    48   1e-06
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    26   3.5  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    26   4.6  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.1  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.1  

>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 38/140 (27%), Positives = 64/140 (45%)
 Frame = +1

Query: 163 ELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGQRTQVQLSLSETVLCLK 342
           +LDL   G  VWLVK+PK++ +KW   P + +   L   RV  +  ++QL L  +     
Sbjct: 22  DLDLGQIGSRVWLVKIPKFLMDKWNSIPED-DAANLGCVRV--KNDEIQLLLQNS----- 73

Query: 343 DPGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNTDSVVPESEKLYMEGRIVQKLECRPYA 522
            P   ++PK + L V N   ++  VF     S T S +  +    + G +  +    P  
Sbjct: 74  -PENADVPKIYNLRVMNKFVRNSYVFRE---SETSSSMKSTA---LVGTVAHECNVSPVI 126

Query: 523 DNTYYNLKSESIRKASMPQR 582
           ++ Y  +  +    AS P+R
Sbjct: 127 NDDYRRVMQKRALAASAPKR 146


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
 Frame = +1

Query: 136 PNNAPNIDRELDLSNTGRGVWLVKVPKYIA---NKWEKAP-GNIEVGKLKISRVPGQRTQ 303
           PN   ++D+  DLS+   G+  + +  YI    NK   +P GN      K     GQ   
Sbjct: 94  PNETSHLDKSRDLSSHSNGLDALAMTPYIVKENNKTHLSPRGNYPSEAEKSCDFYGQ--P 151

Query: 304 VQLSLSETVLCLKDPGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNTDS 450
           +      T  CL      N+  E   D     R  LG  + +V SNT S
Sbjct: 152 LHFYRENTSPCLYGSSLSNVFTEKSSDY----RHGLGSPTSLVSSNTAS 196


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 236 SHLFAIYLGTFTSHTPLP-VFDKSNSRSILGALFGVVILKSIQ*NYVFYRNVIFSYRCGI 60
           SH+  I +GT T  + L    +  +++ +LG   G ++ K+    +VF   ++ ++R G+
Sbjct: 142 SHIVWIVVGTTTFFSLLLYTLNTVSAQELLGRWIGQLMTKNTGFQFVFESAIVPNWRKGL 201

Query: 59  TT 54
            T
Sbjct: 202 IT 203


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +1

Query: 139 NNAPNIDRELDLSNTGRGVWLVKVPKYIANKW--EKAPGNIEVGKLKISRVPGQRTQVQL 312
           N A        L     G W+  VP Y  N+W  E++    +   L  S   G+  + +L
Sbjct: 4   NTAQKQSNATGLQRHVSGRWISNVPSYEGNEWSSEESESEDKESNLTSSENIGKNPEREL 63

Query: 313 SLSETVLCLKDPGEQN 360
           +   T   +++  E++
Sbjct: 64  NSDGTDRIIEEEEEED 79


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 382 DVSNVTRQSLGVFSHVVPSNTDSVVPESEKL 474
           D S VT      ++H+ P++  S++PE  +L
Sbjct: 331 DASLVTGLQSSPYTHIAPASEMSLIPEKPRL 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,258
Number of Sequences: 5004
Number of extensions: 55574
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)