Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L16
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0869 - 32591669-32591794,32591923-32592075,32592293-325923...    39   0.003
04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985     31   0.51 
07_01_1164 - 11016314-11017688,11019144-11019181                       28   6.2  
05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583     28   6.2  
04_04_0705 - 27406405-27406424,27406425-27409260                       27   8.2  

>01_06_0869 -
           32591669-32591794,32591923-32592075,32592293-32592367,
           32592467-32592597,32593788-32593896,32594745-32594936
          Length = 261

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 6/147 (4%)
 Frame = +1

Query: 160 RELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGQRTQVQLSLSETVLCL 339
           + L+ +   R VWL+K P  ++  W++A               G  +    + +  V   
Sbjct: 6   KNLETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKF 65

Query: 340 K----DPGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNTDSVVPESEKLYMEGRIVQKLE 507
           K      G  N PK +          SL +F   VP    S   +  KL  EG++  K +
Sbjct: 66  KMEMAQTGNGNTPKSY----------SLNMFKDFVPMCVFSESNQG-KLSCEGKVGHKFD 114

Query: 508 CRPYADN--TYYNLKSESIRKASMPQR 582
             P++DN   Y  L  E  +K+ +  R
Sbjct: 115 MEPHSDNLVNYGKLCRERTQKSMIKNR 141


>04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985
          Length = 773

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = +1

Query: 334 CLKDPGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNTDSVVPESEKLYMEGRIVQKLECR 513
           CL   GE+      +  V +  R+S      +    +  ++ E E ++ E R +  L+  
Sbjct: 692 CLNVKGEERPVMREVASVLHGLRESFDEEQIIRSDESIQIINEQESVHSEARPISSLQSS 751

Query: 514 PYADNTYYNLKSESIRKASMPQR 582
                T Y+L SE I  AS  +R
Sbjct: 752 DETSTTQYSLPSE-ILSASHLER 773


>07_01_1164 - 11016314-11017688,11019144-11019181
          Length = 470

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 426 CCAIKYRFSSPRVRETLYGRENCTEI--RVQTL 518
           C    YRF SP ++  L G+  C E+  R QTL
Sbjct: 166 CSLAHYRFFSPLIKHLLEGKRLCYELVQRSQTL 198


>05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583
          Length = 602

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 571 WMLFL*IQISSYNMCYLHRVCTLISVQ-FSLPYKVSLTLGLLNLYLMAQ 428
           W LFL   ++   +C+++ VC L+ ++ F    +V+++L    L L A+
Sbjct: 143 WHLFLLTSLAGNGICWINTVCYLLCIKNFPSDSRVAVSLATSYLGLSAK 191


>04_04_0705 - 27406405-27406424,27406425-27409260
          Length = 951

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +1

Query: 322  ETVLCLKDPGE--QNIPKEHILDVSNVTRQSLGVFSHVVPSNTDSVVPESEKLYMEGRIV 495
            ET+   + P E  QNI    IL   N   +   V  ++  +N   +    EK+Y+    +
Sbjct: 868  ETMDLFEMPSEIIQNIQNNEILQEHNHESEHTIVIKNIRWNNGKLL---EEKVYIN---L 921

Query: 496  QKLECRPYADNTYYNLKSES 555
              LE RP+ D   +N+KS++
Sbjct: 922  SLLESRPFIDKEQHNVKSQA 941


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,542,339
Number of Sequences: 37544
Number of extensions: 313536
Number of successful extensions: 627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)