Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L16
         (582 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59745-1|CAA42419.1|  249|Homo sapiens RAP30 protein.                  99   1e-20
X16901-1|CAA34775.1|  249|Homo sapiens 30kb subunit of RAB30 /74...    99   1e-20
BT019525-1|AAV38332.1|  249|Homo sapiens general transcription f...    99   1e-20
BC001771-1|AAH01771.1|  249|Homo sapiens general transcription f...    99   1e-20
AL138963-1|CAH72032.1|  249|Homo sapiens general transcription f...    99   1e-20
AL138693-1|CAH72459.1|  249|Homo sapiens general transcription f...    99   1e-20

>X59745-1|CAA42419.1|  249|Homo sapiens RAP30 protein.
          Length = 249

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 61/146 (41%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
 Frame = +1

Query: 163 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGQRTQVQLSLSETVLC 336
           ELDL+   +  GVWLVKVPKY++ +W KA G  EVGKL+I++  G RT+V  +L+E +  
Sbjct: 6   ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64

Query: 337 LKD----PGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNTDSVVPESEKLYMEGRIVQKL 504
           + D    P   + P+EH   + +V  Q+L VF       T+S    S+KL +EG +VQ+ 
Sbjct: 65  IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114

Query: 505 ECRPYADNTYYNLKSESIRKASMPQR 582
           ECRP A   Y  LK   I ++S P R
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVR 140


>X16901-1|CAA34775.1|  249|Homo sapiens 30kb subunit of RAB30 /74
           protein.
          Length = 249

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 61/146 (41%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
 Frame = +1

Query: 163 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGQRTQVQLSLSETVLC 336
           ELDL+   +  GVWLVKVPKY++ +W KA G  EVGKL+I++  G RT+V  +L+E +  
Sbjct: 6   ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64

Query: 337 LKD----PGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNTDSVVPESEKLYMEGRIVQKL 504
           + D    P   + P+EH   + +V  Q+L VF       T+S    S+KL +EG +VQ+ 
Sbjct: 65  IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114

Query: 505 ECRPYADNTYYNLKSESIRKASMPQR 582
           ECRP A   Y  LK   I ++S P R
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVR 140


>BT019525-1|AAV38332.1|  249|Homo sapiens general transcription
           factor IIF, polypeptide 2, 30kDa protein.
          Length = 249

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 61/146 (41%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
 Frame = +1

Query: 163 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGQRTQVQLSLSETVLC 336
           ELDL+   +  GVWLVKVPKY++ +W KA G  EVGKL+I++  G RT+V  +L+E +  
Sbjct: 6   ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64

Query: 337 LKD----PGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNTDSVVPESEKLYMEGRIVQKL 504
           + D    P   + P+EH   + +V  Q+L VF       T+S    S+KL +EG +VQ+ 
Sbjct: 65  IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114

Query: 505 ECRPYADNTYYNLKSESIRKASMPQR 582
           ECRP A   Y  LK   I ++S P R
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVR 140


>BC001771-1|AAH01771.1|  249|Homo sapiens general transcription
           factor IIF, polypeptide 2, 30kDa protein.
          Length = 249

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 61/146 (41%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
 Frame = +1

Query: 163 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGQRTQVQLSLSETVLC 336
           ELDL+   +  GVWLVKVPKY++ +W KA G  EVGKL+I++  G RT+V  +L+E +  
Sbjct: 6   ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64

Query: 337 LKD----PGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNTDSVVPESEKLYMEGRIVQKL 504
           + D    P   + P+EH   + +V  Q+L VF       T+S    S+KL +EG +VQ+ 
Sbjct: 65  IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114

Query: 505 ECRPYADNTYYNLKSESIRKASMPQR 582
           ECRP A   Y  LK   I ++S P R
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVR 140


>AL138963-1|CAH72032.1|  249|Homo sapiens general transcription
           factor IIF, polypeptide 2, 30kDa protein.
          Length = 249

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 61/146 (41%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
 Frame = +1

Query: 163 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGQRTQVQLSLSETVLC 336
           ELDL+   +  GVWLVKVPKY++ +W KA G  EVGKL+I++  G RT+V  +L+E +  
Sbjct: 6   ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64

Query: 337 LKD----PGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNTDSVVPESEKLYMEGRIVQKL 504
           + D    P   + P+EH   + +V  Q+L VF       T+S    S+KL +EG +VQ+ 
Sbjct: 65  IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114

Query: 505 ECRPYADNTYYNLKSESIRKASMPQR 582
           ECRP A   Y  LK   I ++S P R
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVR 140


>AL138693-1|CAH72459.1|  249|Homo sapiens general transcription
           factor IIF, polypeptide 2, 30kDa protein.
          Length = 249

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 61/146 (41%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
 Frame = +1

Query: 163 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGQRTQVQLSLSETVLC 336
           ELDL+   +  GVWLVKVPKY++ +W KA G  EVGKL+I++  G RT+V  +L+E +  
Sbjct: 6   ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64

Query: 337 LKD----PGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNTDSVVPESEKLYMEGRIVQKL 504
           + D    P   + P+EH   + +V  Q+L VF       T+S    S+KL +EG +VQ+ 
Sbjct: 65  IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114

Query: 505 ECRPYADNTYYNLKSESIRKASMPQR 582
           ECRP A   Y  LK   I ++S P R
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVR 140


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,677,803
Number of Sequences: 237096
Number of extensions: 1914597
Number of successful extensions: 3381
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3375
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)