Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L16
         (582 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U25188-1|AAA86888.1|  277|Drosophila melanogaster initiation fac...   205   4e-53
AY071514-1|AAL49136.1|  277|Drosophila melanogaster RE56801p pro...   205   4e-53
AE014297-1190|AAF54548.1|  277|Drosophila melanogaster CG6538-PA...   205   4e-53
U02461-1|AAA81888.1|  276|Drosophila melanogaster dTFIIF30 protein.   183   2e-46

>U25188-1|AAA86888.1|  277|Drosophila melanogaster initiation factor
           TFIIF smallsubunit protein.
          Length = 277

 Score =  205 bits (500), Expect = 4e-53
 Identities = 102/149 (68%), Positives = 119/149 (79%), Gaps = 6/149 (4%)
 Frame = +1

Query: 154 IDRELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGQRTQVQLSLSETVL 333
           ID++LDLSN GRGVWLVKVPKYIA KWEKAP N++VGKL+I++ PGQ+ QV LSL+  VL
Sbjct: 12  IDKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVL 71

Query: 334 CLKDPGEQNIPKEHILDVSNVTRQSLGVFSHVVPSN------TDSVVPESEKLYMEGRIV 495
            L DP E+ IP EHILDVS VT+Q+LGVFSH+ PS+      T +  P++EKLYMEGRIV
Sbjct: 72  AL-DP-EEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIV 129

Query: 496 QKLECRPYADNTYYNLKSESIRKASMPQR 582
           QKLECRP ADN Y  LK ESIRKAS PQR
Sbjct: 130 QKLECRPIADNCYMKLKLESIRKASEPQR 158


>AY071514-1|AAL49136.1|  277|Drosophila melanogaster RE56801p
           protein.
          Length = 277

 Score =  205 bits (500), Expect = 4e-53
 Identities = 102/149 (68%), Positives = 119/149 (79%), Gaps = 6/149 (4%)
 Frame = +1

Query: 154 IDRELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGQRTQVQLSLSETVL 333
           ID++LDLSN GRGVWLVKVPKYIA KWEKAP N++VGKL+I++ PGQ+ QV LSL+  VL
Sbjct: 12  IDKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVL 71

Query: 334 CLKDPGEQNIPKEHILDVSNVTRQSLGVFSHVVPSN------TDSVVPESEKLYMEGRIV 495
            L DP E+ IP EHILDVS VT+Q+LGVFSH+ PS+      T +  P++EKLYMEGRIV
Sbjct: 72  AL-DP-EEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIV 129

Query: 496 QKLECRPYADNTYYNLKSESIRKASMPQR 582
           QKLECRP ADN Y  LK ESIRKAS PQR
Sbjct: 130 QKLECRPIADNCYMKLKLESIRKASEPQR 158


>AE014297-1190|AAF54548.1|  277|Drosophila melanogaster CG6538-PA
           protein.
          Length = 277

 Score =  205 bits (500), Expect = 4e-53
 Identities = 102/149 (68%), Positives = 119/149 (79%), Gaps = 6/149 (4%)
 Frame = +1

Query: 154 IDRELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGQRTQVQLSLSETVL 333
           ID++LDLSN GRGVWLVKVPKYIA KWEKAP N++VGKL+I++ PGQ+ QV LSL+  VL
Sbjct: 12  IDKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVL 71

Query: 334 CLKDPGEQNIPKEHILDVSNVTRQSLGVFSHVVPSN------TDSVVPESEKLYMEGRIV 495
            L DP E+ IP EHILDVS VT+Q+LGVFSH+ PS+      T +  P++EKLYMEGRIV
Sbjct: 72  AL-DP-EEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIV 129

Query: 496 QKLECRPYADNTYYNLKSESIRKASMPQR 582
           QKLECRP ADN Y  LK ESIRKAS PQR
Sbjct: 130 QKLECRPIADNCYMKLKLESIRKASEPQR 158


>U02461-1|AAA81888.1|  276|Drosophila melanogaster dTFIIF30 protein.
          Length = 276

 Score =  183 bits (445), Expect = 2e-46
 Identities = 97/149 (65%), Positives = 114/149 (76%), Gaps = 6/149 (4%)
 Frame = +1

Query: 154 IDRELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGQRTQVQLSLSETVL 333
           ID++LDLSN GRGVWLVKVPKYIA KWEKAP N++VGKL+I++ PGQ+ QV LSL+  VL
Sbjct: 12  IDKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVL 71

Query: 334 CLKDPGEQNIPKEHILDVSNVTRQSLGVFSHV--VPSNTDSVVP----ESEKLYMEGRIV 495
            L DP E+ IP EHILDVS VT+Q+LG +S     P    + +P    ++EKLYMEGRIV
Sbjct: 72  AL-DP-EEKIPTEHILDVSQVTKQTLG-YSRTWHRPMARRTRLPRRHSDNEKLYMEGRIV 128

Query: 496 QKLECRPYADNTYYNLKSESIRKASMPQR 582
           QKLECRP ADN Y  LK ESIRKAS PQR
Sbjct: 129 QKLECRPIADNCYMKLKLESIRKASEPQR 157


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,457,622
Number of Sequences: 53049
Number of extensions: 546261
Number of successful extensions: 1029
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)