Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L16
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-28|CAD31828.1| 263|Caenorhabditis elegans Hypothetical... 69 3e-12
Z92972-2|CAB07487.1| 336|Caenorhabditis elegans Hypothetical pr... 34 0.085
AL021566-4|CAA16505.1| 336|Caenorhabditis elegans Hypothetical ... 34 0.085
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 31 0.79
Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical pr... 31 0.79
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 31 0.79
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 31 0.79
AF039712-3|AAK21400.3| 393|Caenorhabditis elegans Hypothetical ... 30 1.4
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 29 2.4
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 29 2.4
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 29 2.4
Z73899-6|CAA98078.1| 345|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF016661-1|AAB66049.2| 514|Caenorhabditis elegans Hypothetical ... 28 4.2
Z82272-2|CAB05216.1| 342|Caenorhabditis elegans Hypothetical pr... 27 7.4
>AL132948-28|CAD31828.1| 263|Caenorhabditis elegans Hypothetical
protein Y39B6A.36 protein.
Length = 263
Score = 68.5 bits (160), Expect = 3e-12
Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Frame = +1
Query: 163 ELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGQRTQVQL-------SLS 321
++D R +WLVKVP+Y++ W+ GN+ VGKL+I T L
Sbjct: 10 DVDCELAKRSIWLVKVPRYLSELWDANEGNV-VGKLQIGAQVELHTAKGLIHPKPKEPTE 68
Query: 322 ETVLCLKDPGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNTDSVVPESEKLYMEGRIVQK 501
+ + P IP E+ + +V Q++ V S ++ KL +EGRI++K
Sbjct: 69 GSSSTVTQPEASEIPTEYSFILHDVKSQTMSVLSEDKQGLGADAPIKTGKLAIEGRIIKK 128
Query: 502 LECRPYADNTYYNLKSESIRKASMPQR 582
ECRP A + Y +K I K + P++
Sbjct: 129 AECRPPATSKYMKMKLAHIVKNTQPKK 155
>Z92972-2|CAB07487.1| 336|Caenorhabditis elegans Hypothetical
protein T19C9.2 protein.
Length = 336
Score = 33.9 bits (74), Expect = 0.085
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 293 CPGTRDIFNFPTSMFPGAFSHLFAIYLGTFTSHT 192
CP TR+ F FP +F G SH+F +Y SHT
Sbjct: 188 CP-TREFFIFPVCVFEGTTSHIFLVY-ALVMSHT 219
>AL021566-4|CAA16505.1| 336|Caenorhabditis elegans Hypothetical
protein F08E10.6 protein.
Length = 336
Score = 33.9 bits (74), Expect = 0.085
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 293 CPGTRDIFNFPTSMFPGAFSHLFAIYLGTFTSHT 192
CP TR+ F FP +F G SH+F +Y SHT
Sbjct: 188 CP-TREFFIFPVCVFEGTTSHIFLVY-ALVMSHT 219
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 30.7 bits (66), Expect = 0.79
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 337 LKDPGEQNIP--KEHILDVSNVTRQSLGVFSH-VVPSNTDSVVPESEKLYMEGRIVQKLE 507
L D EQ I KE I+D + +G F H VP+ D V E+EK E + +K+E
Sbjct: 2051 LLDNVEQKIEQVKEPIVDSLHKAYDGVGDFVHETVPNAVDDFVREAEKQLPESPVPEKIE 2110
>Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical
protein W06A7.3d protein.
Length = 570
Score = 30.7 bits (66), Expect = 0.79
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 337 LKDPGEQNIP--KEHILDVSNVTRQSLGVFSH-VVPSNTDSVVPESEKLYMEGRIVQKLE 507
L D EQ I KE I+D + +G F H VP+ D V E+EK E + +K+E
Sbjct: 137 LLDNVEQKIEQVKEPIVDSLHKAYDGVGDFVHETVPNAVDDFVREAEKQLPESPVPEKIE 196
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 30.7 bits (66), Expect = 0.79
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 337 LKDPGEQNIP--KEHILDVSNVTRQSLGVFSH-VVPSNTDSVVPESEKLYMEGRIVQKLE 507
L D EQ I KE I+D + +G F H VP+ D V E+EK E + +K+E
Sbjct: 2051 LLDNVEQKIEQVKEPIVDSLHKAYDGVGDFVHETVPNAVDDFVREAEKQLPESPVPEKIE 2110
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 30.7 bits (66), Expect = 0.79
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 337 LKDPGEQNIP--KEHILDVSNVTRQSLGVFSH-VVPSNTDSVVPESEKLYMEGRIVQKLE 507
L D EQ I KE I+D + +G F H VP+ D V E+EK E + +K+E
Sbjct: 2051 LLDNVEQKIEQVKEPIVDSLHKAYDGVGDFVHETVPNAVDDFVREAEKQLPESPVPEKIE 2110
>AF039712-3|AAK21400.3| 393|Caenorhabditis elegans Hypothetical
protein F54D7.2 protein.
Length = 393
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 267 FSHFNVSWSLLPFICYIFRYLHK-PYSSTSV**I*FTVNIRSVVWSRHIEKYTIKLCILS 91
F H SWS +PF IF + +S +SV + ++ + V ++ H EKY + LS
Sbjct: 134 FDHGLDSWSTVPFTITIFSIFGRGRFSISSVELLCVLISTQIVFFTTHWEKYNTGIMFLS 193
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +1
Query: 283 VPGQRTQVQLSLSETVLCLKDPGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNT-DSVVP 459
+PG+ +V+LSL+ + P++ GVF+ V+P T D P
Sbjct: 396 MPGESAEVELSLNSQMFIE--------PQQRFTIRKGAKTIGTGVFTDVLPPLTNDEKDP 447
Query: 460 ESEKLYMEGRIVQKLECRPYADNTYYNLKSE 552
+S+K M+ +++L PY D LK +
Sbjct: 448 KSKKKLMKAE-MERLGFNPYGDMVEKRLKPD 477
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +1
Query: 283 VPGQRTQVQLSLSETVLCLKDPGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNT-DSVVP 459
+PG+ +V+LSL+ + P++ GVF+ V+P T D P
Sbjct: 397 MPGESAEVELSLNSQMFIE--------PQQRFTIRKGAKTIGTGVFTDVLPPLTNDEKDP 448
Query: 460 ESEKLYMEGRIVQKLECRPYADNTYYNLKSE 552
+S+K M+ +++L PY D LK +
Sbjct: 449 KSKKKLMKAE-MERLGFNPYGDMVEKRLKPD 478
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +1
Query: 283 VPGQRTQVQLSLSETVLCLKDPGEQNIPKEHILDVSNVTRQSLGVFSHVVPSNT-DSVVP 459
+PG+ +V+LSL+ + P++ GVF+ V+P T D P
Sbjct: 397 MPGESAEVELSLNSQMFIE--------PQQRFTIRKGAKTIGTGVFTDVLPPLTNDEKDP 448
Query: 460 ESEKLYMEGRIVQKLECRPYADNTYYNLKSE 552
+S+K M+ +++L PY D LK +
Sbjct: 449 KSKKKLMKAE-MERLGFNPYGDMVEKRLKPD 478
>Z73899-6|CAA98078.1| 345|Caenorhabditis elegans Hypothetical
protein ZK829.8 protein.
Length = 345
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 215 LGTFTSHTPLPVFDKSNSRSILGALFGVVILKSIQ*NYVFYRNVI 81
L ++ PV+D S S ILG L +I SI +YVF+ I
Sbjct: 180 LAMIVANYEYPVYDWSKS-GILGMLIATLITTSIMISYVFFAQKI 223
>AF016661-1|AAB66049.2| 514|Caenorhabditis elegans Hypothetical
protein F02E11.2 protein.
Length = 514
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -3
Query: 298 SAVLVHEIFLIFPLQCFL 245
SA L+H +F+IFPL CFL
Sbjct: 261 SAFLIH-LFIIFPLYCFL 277
>Z82272-2|CAB05216.1| 342|Caenorhabditis elegans Hypothetical
protein F55G11.5 protein.
Length = 342
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 290 DSGLRCSYPYLRP--FFASRILENKTYQKNTYLTCQTSLGNL 409
D G CS+ P F+A ++ K ++TY S GNL
Sbjct: 51 DKGQTCSWTVTVPDGFYAKLVISAKAMDRDTYFQTIDSAGNL 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,165,761
Number of Sequences: 27780
Number of extensions: 308819
Number of successful extensions: 784
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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