Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L14
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   1.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   5.5  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   9.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.7  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 65  FGHFEQYITVFEYK*TYNSKGIIII*SPQHERNK 166
           F +FE  +T++ Y+   N K +  I +  HE  K
Sbjct: 30  FSNFEDRVTMYVYEEIINGKKLTEIINETHENVK 63


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 425 RNGVACW 405
           RNG+ACW
Sbjct: 318 RNGIACW 324


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 460 SSNPSSPHRVRLPSCTSRHWSFNFAVN 540
           +SNP  PHR        R WS + A+N
Sbjct: 103 TSNPCLPHRNSDRDLNIRKWS-SIAIN 128


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 147 GLQMMIIPLELYVYLYSNTV 88
           GLQ  +IP EL   L  N V
Sbjct: 14  GLQAHVIPAELTAKLLGNCV 33


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 153 CCGLQMMIIPLELYVYLY 100
           C G+ +  +PL L +Y Y
Sbjct: 219 CYGIWVYFVPLFLIIYSY 236


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 455 SLANRDSVWC 426
           ++  RDSVWC
Sbjct: 450 NMVTRDSVWC 459


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 579 EGDAFSFYYAPI 614
           E D  SFYY+P+
Sbjct: 787 EFDEMSFYYSPV 798


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 153 CCGLQMMIIPLELYVYLY 100
           C G+ +  +PL L +Y Y
Sbjct: 95  CYGIWVYFVPLFLIIYSY 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,864
Number of Sequences: 438
Number of extensions: 3174
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)