Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L13
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc... 93 2e-20
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 2.3
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 26 3.0
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 26 4.0
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 26 4.0
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 5.3
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 7.0
SPBC530.03c |bag102|bag1-b|BAG family molecular chaperone regula... 25 9.3
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce... 25 9.3
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 25 9.3
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 25 9.3
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 25 9.3
SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and I... 25 9.3
>SPBP8B7.24c |atg8||autophagy associated protein Atg8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 93.5 bits (222), Expect = 2e-20
Identities = 43/104 (41%), Positives = 68/104 (65%)
Frame = +2
Query: 11 KKEVMAIKNKFPTKIPLIVERYHKERSLPTLDKSKFLVPEDITMSQFLVIIRNRIKIKPN 190
K E I+ K+P +IP+I E+ K + +DK K+LVP D+T+ QF+ +IR RIK+ P
Sbjct: 15 KTESQRIREKYPDRIPVICEKVDKS-DIAAIDKKKYLVPSDLTVGQFVYVIRKRIKLSPE 73
Query: 191 QALYLIINNRSMLSMSLTMAQAYESYGNEDGFLYITYASQEVFG 322
+A+++ I+ + +L M+ YE + +EDGFLYITY+ + FG
Sbjct: 74 KAIFIFIDEILPPTAAL-MSTIYEEHKSEDGFLYITYSGENTFG 116
Score = 54.0 bits (124), Expect = 1e-08
Identities = 22/67 (32%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = +2
Query: 323 YQDDMK-GKTNQEVEAIRHRFPNKVPLYVQRYVREREVPTLERTKFLVPQELTMSQFLYI 499
++DD K E + IR ++P+++P+ ++ V + ++ +++ K+LVP +LT+ QF+Y+
Sbjct: 5 FKDDFSFEKRKTESQRIREKYPDRIPVICEK-VDKSDIAAIDKKKYLVPSDLTVGQFVYV 63
Query: 500 IRTKMKL 520
IR ++KL
Sbjct: 64 IRKRIKL 70
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 147 CDIVISSGTKNFDLSN 100
CD +S+G+ NFDLSN
Sbjct: 150 CDTGLSAGSDNFDLSN 165
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 382 ESMSYRLHFLIRFPFHIVLVAEDFLRR 302
E MSYR H I PF IV + E ++
Sbjct: 286 ELMSYRSHENINIPFRIVPIVEQLSKQ 312
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 4.0
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -2
Query: 519 SFIFVLIIYRNCDIVSSCGTRNLVLSRVGT--SRSLTYRWTYSGTLLGNLCLIASTS*FV 346
S + +L ++R DI+ R L GT S+ + RW Y TLL + T +
Sbjct: 260 SLLTLLAVFR--DIIPGYKIRPLSEEEQGTKLSKEVAQRWEYEQTLLKHYAKFLQTLETI 317
Query: 345 FPFISSW*PKTSCDAY 298
SS +T Y
Sbjct: 318 LKSFSSTLDETQLSLY 333
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 55 TVDSREVSQGKKSANVGQIEILSTRRYYDVAVPSDNQKQNKNQAES 192
T DS+ V +K+ N G+ I + + YY + QKQ + +A S
Sbjct: 14 THDSQSV---RKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEERASS 56
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = -1
Query: 376 MSYRLHFLIRFPFHIVLVAEDFLRRICNV*KSVFISIA 263
+SY ++++I FPFH L+ ++L+R + KS+ IA
Sbjct: 200 ISYFVYWVISFPFH--LIRPEYLQRFFLI-KSISTYIA 234
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 121 STRRYYDVAVPSDNQKQNKNQAESSPLSHN 210
S+RR+ D A QK+N N++ S + N
Sbjct: 25 SSRRWTDRARDRKRQKRNSNESSKSTVKRN 54
>SPBC530.03c |bag102|bag1-b|BAG family molecular chaperone
regulator|Schizosaccharomyces pombe|chr 2|||Manual
Length = 206
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 367 RLHFLIRFPFHIVLVAEDFLRRICN 293
+L+F++R P ++ FLRR+CN
Sbjct: 50 KLNFVLRQPRLNMVSYTSFLRRVCN 74
>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 9.3
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 344 KTNQEVEAIRHRFPNKVPLYVQRYVREREVPTLERTKFLVPQEL 475
K QE+E H+F V RY EV TL R F P EL
Sbjct: 44 KAPQEIEEGLHKFEVLFESVVDRYYDGFEVYTL-RNIFSYPPEL 86
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 24.6 bits (51), Expect = 9.3
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 10 KERSYGDKK*ISYKNTVDSREVSQGKKSANVGQIEILSTR--RYYDVAVPSDNQKQN 174
+ YGDKK S K S E + ++ + Q EI S++ ++ A+P+ N +++
Sbjct: 40 ERNGYGDKKGSSSKEKTSSFEDELAEYASQLDQDEIKSSKDQQWQRPALPAINPEKD 96
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = +1
Query: 64 SREVSQGKKSANVGQIEILSTRRYYDVAVPSDNQKQN 174
++ +S+GKK ++ S + +YD+ P+ + +N
Sbjct: 6 NKRLSKGKKGIKKRVVDPFSRKEWYDIKAPAFFEVKN 42
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -1
Query: 415 VSLDVQRNLIRESMSY--RLHFLIRFPF 338
VSLDVQ+N+I ++ Y R + + FP+
Sbjct: 55 VSLDVQKNMITQTSLYVLRCNNISTFPY 82
>SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and III
subunit Rpb6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 332 DMKGKTNQEVEAIRHRFPNKVPLYVQRYV 418
D++G+T+ A++ K+PL V+RY+
Sbjct: 100 DLEGETDPLQIAMKELAQKKIPLLVRRYL 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,542
Number of Sequences: 5004
Number of extensions: 42034
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -