Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L13
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 91 4e-19
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 91 5e-19
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 66 2e-14
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 47 8e-06
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 46 3e-05
07_03_0256 - 15875066-15877025,15877292-15877911 31 0.44
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007 28 5.4
03_02_0633 + 9978193-9978376,9978661-9978845,9979284-9979466,997... 27 9.4
02_03_0215 + 16505994-16506542,16506803-16507894 27 9.4
02_03_0204 - 16369800-16371758,16372260-16372331 27 9.4
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 91.5 bits (217), Expect = 4e-19
Identities = 42/102 (41%), Positives = 67/102 (65%)
Frame = +2
Query: 17 EVMAIKNKFPTKIPLIVERYHKERSLPTLDKSKFLVPEDITMSQFLVIIRNRIKIKPNQA 196
E I+ K+ +IP+IVE+ K +P +DK K+LVP D+T+ QF+ ++R RIK+ P +A
Sbjct: 182 ESARIREKYSDRIPVIVEKADKT-DVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKA 240
Query: 197 LYLIINNRSMLSMSLTMAQAYESYGNEDGFLYITYASQEVFG 322
+++ + N + SL M+ YE +EDGFLY+TY+ + FG
Sbjct: 241 IFVFVKNTLPPTASL-MSAIYEENKDEDGFLYMTYSGENTFG 281
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/55 (34%), Positives = 40/55 (72%)
Frame = +2
Query: 356 EVEAIRHRFPNKVPLYVQRYVREREVPTLERTKFLVPQELTMSQFLYIIRTKMKL 520
E IR ++ +++P+ V++ + +VP +++ K+LVP +LT+ QF+Y++R ++KL
Sbjct: 182 ESARIREKYSDRIPVIVEK-ADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKL 235
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 91.1 bits (216), Expect = 5e-19
Identities = 39/102 (38%), Positives = 67/102 (65%)
Frame = +2
Query: 17 EVMAIKNKFPTKIPLIVERYHKERSLPTLDKSKFLVPEDITMSQFLVIIRNRIKIKPNQA 196
E I+ K+ +IP+IVE+ + +P +DK K+LVP D+T+ QF+ ++R RIK+ P +A
Sbjct: 18 EANRIREKYSDRIPVIVEKAERS-DIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKA 76
Query: 197 LYLIINNRSMLSMSLTMAQAYESYGNEDGFLYITYASQEVFG 322
+++ + N ++ + M+ YE +EDGFLY+TY+ + FG
Sbjct: 77 IFIFVKN-TLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
Score = 52.0 bits (119), Expect = 3e-07
Identities = 19/55 (34%), Positives = 40/55 (72%)
Frame = +2
Query: 356 EVEAIRHRFPNKVPLYVQRYVREREVPTLERTKFLVPQELTMSQFLYIIRTKMKL 520
E IR ++ +++P+ V++ R ++P +++ K+LVP +LT+ QF+Y++R ++KL
Sbjct: 18 EANRIREKYSDRIPVIVEKAERS-DIPDIDKKKYLVPADLTVGQFVYVVRKRIKL 71
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 65.7 bits (153), Expect(2) = 2e-14
Identities = 26/71 (36%), Positives = 48/71 (67%)
Frame = +2
Query: 110 SKFLVPEDITMSQFLVIIRNRIKIKPNQALYLIINNRSMLSMSLTMAQAYESYGNEDGFL 289
+++LVP D+T+ QF+ ++R RIK+ +A+++ + N ++ + M+ YE +EDGFL
Sbjct: 1883 TRYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN-TLPPTAALMSAIYEENKDEDGFL 1941
Query: 290 YITYASQEVFG 322
Y+TY+ + FG
Sbjct: 1942 YMTYSGENTFG 1952
Score = 35.1 bits (77), Expect(2) = 2e-04
Identities = 12/24 (50%), Positives = 21/24 (87%)
Frame = +2
Query: 449 TKFLVPQELTMSQFLYIIRTKMKL 520
T++LVP +LT+ QF+Y++R ++KL
Sbjct: 1883 TRYLVPADLTVGQFVYVVRKRIKL 1906
Score = 30.7 bits (66), Expect(2) = 2e-14
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 17 EVMAIKNKFPTKIPLIVERYHKERSLPTLDKSK 115
E I+ K+P +IP+IVE+ + +P +DK K
Sbjct: 1811 EANRIREKYPDRIPVIVEKAERS-DIPDIDKKK 1842
Score = 27.1 bits (57), Expect(2) = 2e-04
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +2
Query: 356 EVEAIRHRFPNKVPLYVQRYVREREVPTLERTK 454
E IR ++P+++P+ V++ R ++P +++ K
Sbjct: 1811 EANRIREKYPDRIPVIVEKAERS-DIPDIDKKK 1842
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +2
Query: 119 LVPEDITMSQFLVIIRNRIKIKPNQALYLIINNRSMLSMSLTMAQAYESYGNE-DGFLYI 295
++ E + S + + ++ + P AL++ +NN + L M YESY +E DGFLY+
Sbjct: 206 VIVEKFSRSNLPEMEKRKLHLSPGTALFVFVNNTLPQTAQL-MGSVYESYKDEGDGFLYL 264
Query: 296 TYASQEVFG 322
Y+S++ FG
Sbjct: 265 CYSSEKTFG 273
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +2
Query: 164 RNRIKIKPNQALYLIINNRSMLSMSLTMAQAYESYGNE-DGFLYITYASQEVFG 322
+ ++ + P AL++ +NN + L M YESY +E DGFLY+ Y+S++ FG
Sbjct: 35 KRKLHLPPGTALFVFVNNTLPQTAQL-MGSVYESYKDEGDGFLYLCYSSEKTFG 87
>07_03_0256 - 15875066-15877025,15877292-15877911
Length = 859
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -2
Query: 153 RNCDIVISSGTKNFDLSNVGRLLSL*YLSTINGIFVGNL 37
R D+ SG KN DL ++GRL+ L YL+ I G + +L
Sbjct: 510 RVLDLENCSGLKNHDLKSIGRLIQLRYLN-IKGTDISDL 547
>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
Length = 952
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 239 LTMAQAYES---YGNEDGFLYITYASQEVFGYQDDMKGKTNQEVEAIRHRFPNKVPL 400
+ A AYE +G++ G++Y T V GY+ +KG ++ H F P+
Sbjct: 610 MVTAAAYEKKTGWGSDIGWVYGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPI 666
>03_02_0633 +
9978193-9978376,9978661-9978845,9979284-9979466,
9979564-9979695,9979826-9980011,9980381-9980470,
9980540-9980623,9980704-9980844,9980919-9981146,
9981511-9981624
Length = 508
Score = 27.1 bits (57), Expect = 9.4
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Frame = +2
Query: 161 IRNRIKIKPNQALYLIINNRSMLSMSLTMAQAYESY-GNEDGFLYITYASQEVFGYQDDM 337
+RNR++ + A YL+++NR + A ES N + F AS Y +
Sbjct: 313 LRNRLQNEATVAYYLLLDNRFRATSGYLGADYQESLERNFNRFASSESASSNTRHY---L 369
Query: 338 KGKTNQEVEAIRHRFP--NKVPLYVQRYVREREVPTLERTKFLVPQELTMS 484
G ++ +R +P K L +Q + RE+ +E K L Q+L +S
Sbjct: 370 PGSSDPHASGLRPHYPVERKWALGLQSRAQPREI-MIEVLKAL--QDLNVS 417
>02_03_0215 + 16505994-16506542,16506803-16507894
Length = 546
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 153 RNCDIVISSGTKNFDLSNVGRLLSL*YLS 67
R D+ +SG K+ DLS +G L L YLS
Sbjct: 65 RILDLEGTSGLKDRDLSQIGNFLHLRYLS 93
>02_03_0204 - 16369800-16371758,16372260-16372331
Length = 676
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 153 RNCDIVISSGTKNFDLSNVGRLLSL*YLS 67
R D+ +SG K+ DLS +G L L YLS
Sbjct: 260 RILDLEGTSGLKDRDLSQIGNFLHLRYLS 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,146
Number of Sequences: 37544
Number of extensions: 246014
Number of successful extensions: 648
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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