Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L13
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical pr...   117   5e-27
U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap a...    94   5e-20
AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A recept...    94   5e-20
Z66499-1|CAA91296.1|  207|Caenorhabditis elegans Hypothetical pr...    34   0.073
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U61948-4|AAB03146.1|  316|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z75533-8|CAA99821.1|  464|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL132951-2|CAC44305.1|  561|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical
           protein ZK593.6 protein.
          Length = 130

 Score =  117 bits (282), Expect = 5e-27
 Identities = 49/107 (45%), Positives = 78/107 (72%)
 Frame = +2

Query: 2   HEGKKEVMAIKNKFPTKIPLIVERYHKERSLPTLDKSKFLVPEDITMSQFLVIIRNRIKI 181
           HE +K+V  I+++ P K+P+I+ER+  ERSLP +D+ KFLVPE IT+++ + I+R R+++
Sbjct: 24  HERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQL 83

Query: 182 KPNQALYLIINNRSMLSMSLTMAQAYESYGNEDGFLYITYASQEVFG 322
            P QA +L++N RSM+S S++M+  Y    + DGF+Y+ Y SQ  FG
Sbjct: 84  HPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130



 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 24/60 (40%), Positives = 44/60 (73%)
 Frame = +2

Query: 353 QEVEAIRHRFPNKVPLYVQRYVREREVPTLERTKFLVPQELTMSQFLYIIRTKMKLRESQ 532
           ++VE IR + PNKVP+ ++R+  ER +P ++R KFLVP+ +T+++ + I+R +++L   Q
Sbjct: 28  KDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQ 87


>U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 1 protein.
          Length = 123

 Score = 94.3 bits (224), Expect = 5e-20
 Identities = 45/104 (43%), Positives = 69/104 (66%)
 Frame = +2

Query: 29  IKNKFPTKIPLIVERYHKERSLPTLDKSKFLVPEDITMSQFLVIIRNRIKIKPNQALYLI 208
           I+ K+P +IP+IVE+  K + L  LDK K+LVP D+T+ QF  +IR RI+++P  AL+  
Sbjct: 21  IRRKYPDRIPVIVEKAPKSK-LHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFF 79

Query: 209 INNRSMLSMSLTMAQAYESYGNEDGFLYITYASQEVFGYQDDMK 340
           +NN    +M+ TM Q Y+ +  ED FLYI Y+ + V+G + + K
Sbjct: 80  VNNVIPQTMT-TMGQLYQDHHEEDLFLYIAYSDESVYGGEVEKK 122



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 20/60 (33%), Positives = 42/60 (70%)
 Frame = +2

Query: 344 KTNQEVEAIRHRFPNKVPLYVQRYVREREVPTLERTKFLVPQELTMSQFLYIIRTKMKLR 523
           K   E + IR ++P+++P+ V++  + + +  L++ K+LVP +LT+ QF ++IR +++LR
Sbjct: 13  KRRAEGDKIRRKYPDRIPVIVEKAPKSK-LHDLDKKKYLVPSDLTVGQFYFLIRKRIQLR 71


>AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A
           receptor-associated protein protein.
          Length = 123

 Score = 94.3 bits (224), Expect = 5e-20
 Identities = 45/104 (43%), Positives = 69/104 (66%)
 Frame = +2

Query: 29  IKNKFPTKIPLIVERYHKERSLPTLDKSKFLVPEDITMSQFLVIIRNRIKIKPNQALYLI 208
           I+ K+P +IP+IVE+  K + L  LDK K+LVP D+T+ QF  +IR RI+++P  AL+  
Sbjct: 21  IRRKYPDRIPVIVEKAPKSK-LHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFF 79

Query: 209 INNRSMLSMSLTMAQAYESYGNEDGFLYITYASQEVFGYQDDMK 340
           +NN    +M+ TM Q Y+ +  ED FLYI Y+ + V+G + + K
Sbjct: 80  VNNVIPQTMT-TMGQLYQDHHEEDLFLYIAYSDESVYGGEVEKK 122



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 20/60 (33%), Positives = 42/60 (70%)
 Frame = +2

Query: 344 KTNQEVEAIRHRFPNKVPLYVQRYVREREVPTLERTKFLVPQELTMSQFLYIIRTKMKLR 523
           K   E + IR ++P+++P+ V++  + + +  L++ K+LVP +LT+ QF ++IR +++LR
Sbjct: 13  KRRAEGDKIRRKYPDRIPVIVEKAPKSK-LHDLDKKKYLVPSDLTVGQFYFLIRKRIQLR 71


>Z66499-1|CAA91296.1|  207|Caenorhabditis elegans Hypothetical
           protein T01B7.3 protein.
          Length = 207

 Score = 33.9 bits (74), Expect = 0.073
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
 Frame = +2

Query: 68  ERYHKERSLPTLDKSKFLVPEDITMSQFLVIIRNRI-KIKP---NQALYLIINNRSMLSM 235
           E+YH    +     +  L+  DIT  +    ++N + +IK    N A  LI+ N+  L  
Sbjct: 72  EKYHALGPIYYRGSNGVLLVFDITDRKSFEKVKNWVLEIKTCLGNTAEILIVGNKIDLEE 131

Query: 236 SLTMA-QAYESYGNEDGFLYITYASQEVFGYQDDMKGKTNQEVEAIRHRFPNKVPLYVQR 412
              +  Q  E+Y   +G LY+  ++Q+  G  D  +  T + +E  R R  +  P    R
Sbjct: 132 ERQVTRQDAEAYAESEGALYMETSAQDNVGISDAFESLTAKMIEHSRTR--STEPPSTNR 189

Query: 413 YVREREVPTLERTK 454
            +R  +    ER+K
Sbjct: 190 SIRLIDNDEAERSK 203


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 65   VERYHKERSLPTLDKSKFLVPE 130
            +E+YHK+R++ +  KS+ LVPE
Sbjct: 3258 MEKYHKDRNVRSSGKSEELVPE 3279


>U61948-4|AAB03146.1|  316|Caenorhabditis elegans Hypothetical
           protein C46A5.6 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +1

Query: 25  GDKK*ISYKNTVDSREVSQGKKSANVGQIEILSTRRYYDVAVPSDNQKQ------NKNQA 186
           GD   I +K  V S + ++G+K     +IE LST R        + QK+      +KN+ 
Sbjct: 229 GDGGEIVFKEPVQSTKKTRGRKRGTSVRIEKLSTSRRTSAKKKEEKQKETETFDADKNEN 288

Query: 187 ESSP 198
            S+P
Sbjct: 289 PSTP 292


>Z75533-8|CAA99821.1|  464|Caenorhabditis elegans Hypothetical
           protein C54G4.9 protein.
          Length = 464

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 418 DVSLDVQRNLIRESMSYRLHFLIRFPFHIVLVAEDF 311
           DV + +  N +   M +     I  PFH +LV EDF
Sbjct: 160 DVIISLNANKVNIPMKFLNELAIVSPFHPILVIEDF 195


>AL132951-2|CAC44305.1|  561|Caenorhabditis elegans Hypothetical
           protein Y67H2A.4a protein.
          Length = 561

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 101 LDKSKFLVPEDITMSQFLVIIRNRIKIKPNQALYLIINN 217
           LDK +F   + + MSQ  V  R+R  I PNQ+  +  N+
Sbjct: 318 LDKEEFTKVQQLIMSQTTVGQRHRDHITPNQSFRVETNS 356


>Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical
           protein ZK829.10 protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -1

Query: 514 HFCSYYIQKL*HSELLWHQKLGPFQGWNFAFSDVSLDVQRNLIRESM 374
           HF  +  +K  +S +LWH++L   + WN    ++S + QRN   + +
Sbjct: 554 HFEKFEKEKQFNSSILWHRQL-HLRSWNRIEKEMS-EEQRNFAHQHL 598


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,730,868
Number of Sequences: 27780
Number of extensions: 228229
Number of successful extensions: 693
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)