Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L12
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    94   1e-20
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   1.7  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   2.9  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   3.8  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   8.9  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 56/151 (37%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
 Frame = +1

Query: 1   ARGARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEAKIEDLS 180
           A  A+K++ KLGLK V+G+ RV +R+ KNIL +IN P V+K+  ++ YIV G+  +ED++
Sbjct: 24  AEKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMA 82

Query: 181 QQA-----TMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXXIV 345
            QA     +   A   K                                         +V
Sbjct: 83  AQARAFNESQKQATETKEEAAITEESGDAQPADTAKIEESFEQEKAVDETGVDAKDIELV 142

Query: 346 MSQANVSRARAVRALRNNQSDIVNAIMELTM 438
           M+QANVSRA+AV AL+ N SD+VNAIM LTM
Sbjct: 143 MAQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 165 LRLSKYYVSVRVWVLEDIRIVDHKEYVL*FPYCNSVYTLYKLEAKFAHD 19
           LR+S YY S  ++     ++ D   YVL FP+ N+    Y+ E K  +D
Sbjct: 255 LRMSLYYDSNELFK----KMTDDLNYVLKFPFDNTRGNEYEKEQKIRND 299


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 378 SPSP*NVCLRHYYLHVFLVHS 316
           S  P  +CL  Y +H+FL+HS
Sbjct: 123 SDPPVKICLLAYSVHLFLLHS 143


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -1

Query: 474 YESYVYKLLSALHRQLHNS--VDDVRLVVPERTDSPSP*NVCLRHYYLHV 331
           YE+Y + +     +++     V ++R  +PE T+     N+    Y LH+
Sbjct: 296 YETYNFSIYKNQDKEVEGDIRVSELRFSLPESTEVQQKRNIFTPQYQLHI 345


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 462 VYKLLSALHRQLHNSVDDVRLVVPERTDSPSP*NVC 355
           +Y L+  +   + NS  D   VV + ++SPS   VC
Sbjct: 296 IYPLIPGIIEFIRNSWSDACPVVKDGSNSPSASKVC 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,897
Number of Sequences: 5004
Number of extensions: 31114
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)