Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L12
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098          119   2e-27
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087...   109   1e-24
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821...    30   1.3  
05_06_0065 - 25303143-25303769,25303868-25304758,25305096-253052...    28   5.1  
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    27   6.8  
03_02_0624 + 9935479-9935619,9935780-9935887                           27   6.8  

>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
          Length = 221

 Score =  119 bits (286), Expect = 2e-27
 Identities = 64/142 (45%), Positives = 88/142 (61%)
 Frame = +1

Query: 10  ARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQQA 189
           +RK M KLG+K V GV+R+TI+++KNILFV++ PDVFK+P S+TY++FGEAKIEDLS Q 
Sbjct: 84  SRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEAKIEDLSSQL 143

Query: 190 TMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXXIVMSQANVSR 369
              AA++F+                     A                   +VM+QA+VSR
Sbjct: 144 QAQAAQQFRMQDLSKVMSKPDAAAA-----APADEEEEVDETGIEPRDIDLVMTQASVSR 198

Query: 370 ARAVRALRNNQSDIVNAIMELT 435
           A+AV+AL+ +  DIV+AIMELT
Sbjct: 199 AKAVKALKAHDGDIVSAIMELT 220


>01_07_0123 +
           41206782-41206844,41207701-41207782,41208587-41208717,
           41208758-41209147
          Length = 221

 Score =  109 bits (262), Expect = 1e-24
 Identities = 71/161 (44%), Positives = 87/161 (54%), Gaps = 19/161 (11%)
 Frame = +1

Query: 10  ARKIMSKLGLKLVQGVNRVTIRKSKN-------------------ILFVINNPDVFKNPH 132
           +RK M KLG+K + GV+RVTI+KSKN                   ILFVI+ PDVFK+P+
Sbjct: 67  SRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLHYQILFVISKPDVFKSPN 126

Query: 133 SDTYIVFGEAKIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXX 312
           SDTY++FGEAKIEDLS Q    AAE+FK                   P A          
Sbjct: 127 SDTYVIFGEAKIEDLSSQLQTQAAEQFK-------APDLSNVISKAEPSAAAQDDEEVDE 179

Query: 313 XXXXXXXXXIVMSQANVSRARAVRALRNNQSDIVNAIMELT 435
                    +VM+QA VSR+RAV+AL+    DIV AIMELT
Sbjct: 180 SGVEPKDIELVMTQATVSRSRAVKALKAANGDIVTAIMELT 220


>08_02_0952 -
           22981116-22981268,22981930-22981974,22982052-22982153,
           22983262-22983468,22984783-22985042,22985338-22985442,
           22986244-22986247,22986877-22986962,22987022-22987064
          Length = 334

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 140 VSECGFLKTSGLLITKSMFFDFLIVTLFTPCTSLRPSL 27
           V + G L  SG  +TK++FF+FL   +    T+L  SL
Sbjct: 236 VGDFGILVRSGFTVTKALFFNFLSALVALAGTALALSL 273


>05_06_0065 -
           25303143-25303769,25303868-25304758,25305096-25305202,
           25305518-25305629
          Length = 578

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 453 LLSALHRQLHNSVDDVRLVVPERTDSPSP 367
           +L   H Q H+S DD +L+ P R   P+P
Sbjct: 431 VLDRSHDQCHDSHDDPKLLPPPRFPRPAP 459


>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
            7316430-7316625,7316727-7316953,7317177-7318134,
            7320104-7321307,7321517-7321876,7321965-7323195,
            7323334-7323599,7323738-7326335
          Length = 2453

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -1

Query: 507  MRSD*TRDLNAYE----SYVYKLLSALHRQLHNSVDDVRLVVPE 388
            + SD   ++N Y     SY+Y +LSA H  L  S  ++ L  PE
Sbjct: 1630 IHSDVYPEINGYNKQRLSYIYDILSACHSYLKRS-SEIELTYPE 1672


>03_02_0624 + 9935479-9935619,9935780-9935887
          Length = 82

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 159 LSKYYVSVRVWVLEDIRIVDHKEYVL 82
           L +   S+R++   DI +VDHK Y+L
Sbjct: 26  LPRRLFSIRIFRYSDIPLVDHKRYLL 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,818,767
Number of Sequences: 37544
Number of extensions: 222594
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)