Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L12
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024847-2|AAO21415.1| 197|Caenorhabditis elegans Hypothetical ... 126 9e-30
AC024847-3|AAF60854.1| 195|Caenorhabditis elegans Hypothetical ... 125 2e-29
AF408761-1|AAO27840.1| 741|Caenorhabditis elegans Rap1GAP protein. 28 4.6
AF016660-1|AAK71368.1| 742|Caenorhabditis elegans Hypothetical ... 28 4.6
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 27 6.0
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 27 6.0
AF273829-1|AAG15178.1| 372|Caenorhabditis elegans nuclear recep... 27 8.0
AC024776-16|AAL32242.1| 363|Caenorhabditis elegans Nuclear horm... 27 8.0
>AC024847-2|AAO21415.1| 197|Caenorhabditis elegans Hypothetical
protein Y65B4BR.5b protein.
Length = 197
Score = 126 bits (304), Expect = 9e-30
Identities = 72/143 (50%), Positives = 85/143 (59%)
Frame = +1
Query: 10 ARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQQA 189
ARK+ SKLGLK V GV+RV IRKSKNILFVIN PDVFK+P SDTYI+FGEAKIEDL+Q A
Sbjct: 62 ARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDTYIIFGEAKIEDLTQHA 121
Query: 190 TMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXXIVMSQANVSR 369
M+A E K +V+SQAN +R
Sbjct: 122 QMSAIENLKPTREAPQLKTVEEDENEDVEF-------KEDSTGIEEKDIELVISQANTTR 174
Query: 370 ARAVRALRNNQSDIVNAIMELTM 438
+A+RAL+ +DIVNAIM LTM
Sbjct: 175 NKAIRALKEADNDIVNAIMSLTM 197
>AC024847-3|AAF60854.1| 195|Caenorhabditis elegans Hypothetical
protein Y65B4BR.5a protein.
Length = 195
Score = 125 bits (301), Expect = 2e-29
Identities = 72/143 (50%), Positives = 85/143 (59%)
Frame = +1
Query: 10 ARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQQA 189
ARK+ SKLGLK V GV+RV IRKSKNILFVIN PDVFK+P SDTYI+FGEAKIEDL+Q A
Sbjct: 62 ARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDTYIIFGEAKIEDLTQHA 121
Query: 190 TMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXXIVMSQANVSR 369
M+A E K +V+SQAN +R
Sbjct: 122 QMSAIENLKPTREAPQLKTVE---------EDENEDVEEDSTGIEEKDIELVISQANTTR 172
Query: 370 ARAVRALRNNQSDIVNAIMELTM 438
+A+RAL+ +DIVNAIM LTM
Sbjct: 173 NKAIRALKEADNDIVNAIMSLTM 195
>AF408761-1|AAO27840.1| 741|Caenorhabditis elegans Rap1GAP protein.
Length = 741
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 510 HMRSD*TRDLNAYESYVYKLLSALHRQLHNSVDDVRLVVPERTDSPS 370
H R T +N L+ + R N +DD R +PERT +P+
Sbjct: 62 HERGLFTTGINYNAEKSEDFLNMIERMQSNRLDDQRCEMPERTHNPT 108
>AF016660-1|AAK71368.1| 742|Caenorhabditis elegans Hypothetical
protein F53A10.2a protein.
Length = 742
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 510 HMRSD*TRDLNAYESYVYKLLSALHRQLHNSVDDVRLVVPERTDSPS 370
H R T +N L+ + R N +DD R +PERT +P+
Sbjct: 63 HERGLFTTGINYNAEKSEDFLNMIERMQSNRLDDQRCEMPERTHNPT 109
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -1
Query: 159 LSKYYVSVRV-----WVLEDIRIVDHKEYVL*FPYCNSVYTLYKL 40
L YYV R LE IR K+ ++ FP CNSV YK+
Sbjct: 232 LKNYYVECRADEKTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKI 276
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 153 WRGEDRGSVTASHYGSGREVQGTGNCC 233
++GE G +H+GS REV GT C
Sbjct: 978 YQGERCGECAQNHWGSPREVGGTCERC 1004
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 402 VGHRQRYYGADDVRHL-TIYKHNFRKRLSPWF 494
+GHR+R GA D+ H+ H+F R+S F
Sbjct: 194 IGHRERLPGASDIIHIKDSAGHSFATRISNVF 225
>AF273829-1|AAG15178.1| 372|Caenorhabditis elegans nuclear receptor
NHR-87 protein.
Length = 372
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 393 PERTDSPSP*N-VCLRHYYLHVFLVHSGVI 307
P+ D PS + L+H+YL F++ SG I
Sbjct: 176 PQLADFPSDQRTILLKHFYLQFFILESGFI 205
>AC024776-16|AAL32242.1| 363|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 87 protein.
Length = 363
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 393 PERTDSPSP*N-VCLRHYYLHVFLVHSGVI 307
P+ D PS + L+H+YL F++ SG I
Sbjct: 167 PQLADFPSDQRTILLKHFYLQFFILESGFI 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,853,754
Number of Sequences: 27780
Number of extensions: 184429
Number of successful extensions: 524
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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