Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L10
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    28   0.62 
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   1.9  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   4.4  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   4.4  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   7.6  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +3

Query: 192 PNYYLNKEV*YHCLMIY-VFSYNSILY---SPILFNLCVKLFRYTGRIVLIIANVLCNLI 359
           PN+YL+  + Y  LM Y +F    I Y   S  + N       YT    L+ +NV  N++
Sbjct: 609 PNFYLSMVIMYSILMGYLLFCSGWIAYRAISDAIHNASSTSSSYTS--ALLNSNVFINIV 666

Query: 360 VNLS 371
           ++LS
Sbjct: 667 ISLS 670


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 338 QCVVQLNSEFILSLTFTILTSPLL*LFSYFQLPLLDN 448
           +C  Q+N+++ +S  FTI+ S L+ + +Y    +  N
Sbjct: 123 KCSNQVNTQYSVSFLFTIMASVLISVLNYISQKIFLN 159


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 279 LFNLCVKLFRYTGRIV-LIIANVLCNLIVNLSFP*LSQYLLHL 404
           L +LCV L   T   V +   NVL  L+   S P LS+Y++ L
Sbjct: 475 LCSLCVTLINDTFEPVRMATTNVLATLVQIFSQPVLSKYIVGL 517


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 246 FSYNSILYSPILFNLCVKLFRYTGRIVLI-IANVLCNLIVNLSFP*LSQYLLH 401
           +SY + + + ILF L  +L RYT     + +A  + +    + F  L  Y ++
Sbjct: 234 YSYKNSISNGILFQLAARLARYTNNDTYVDLAQKVWDWSTTVGFVDLDDYTVY 286


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 141 YIYFTSYKLSKCVVCFLPNYYLNKEV*YHCLMIY--VFSYNSILYSPILFNLCVKLFRY 311
           + +F S+     +  F+  Y  N  V + C   Y  +FS+ S L++ + FN   +L R+
Sbjct: 81  FFFFFSHCRRFHIAIFIHPYDSNV-VPFFCFFFYFSLFSFFSFLFTSLHFNFFFRLCRH 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,549
Number of Sequences: 5004
Number of extensions: 37279
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)