Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L10
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0012 - 7355493-7355645,7356309-7356370,7356885-7356972,735...    27   5.7  
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547...    27   10.0 
01_06_1298 - 36099408-36099686,36099760-36099927,36100036-361002...    27   10.0 

>05_03_0012 -
           7355493-7355645,7356309-7356370,7356885-7356972,
           7357677-7357780,7357931-7358010,7359127-7359183,
           7359924-7360036
          Length = 218

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 465 YTIWY*LSSKGSWK*--LNSHNKGEVSIVKVKERINSLLS 352
           YT WY L    S     +  HN   V IVKV++RIN +++
Sbjct: 94  YTPWYNLKKTPSMDVGQVGFHNSKLVRIVKVEKRINEIVN 133


>07_01_0716 +
           5472618-5472818,5472943-5472985,5473672-5473761,
           5473863-5473938,5474435-5474504,5474911-5475075,
           5475261-5475404,5475547-5475651,5475876-5476022,
           5476463-5476531,5476882-5476989,5477392-5477483,
           5477559-5477598,5478129-5478221,5478386-5478958,
           5479596-5479610
          Length = 676

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 17  RSYIIIPQQLGPNL*NCIFKKYKVI 91
           RS+ I+ QQLGP+L N +   Y V+
Sbjct: 51  RSFAIVIQQLGPDLRNAVCVFYLVL 75


>01_06_1298 -
           36099408-36099686,36099760-36099927,36100036-36100203,
           36100346-36100550,36100683-36100880,36101963-36102048,
           36103730-36104143
          Length = 505

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/50 (18%), Positives = 27/50 (54%)
 Frame = -2

Query: 394 KYCESQGKDKFTIKLHNTLAIIKTILPVYLKSFTHRLNSIGEYKIELYEN 245
           K+ +   ++ F  +L N + ++  +    ++ F H L+++  +KI+ + +
Sbjct: 168 KFSDIYDEEHFVQRLKNDVRVVDKVPEFIMERFGHNLSNVFNFKIKAWSS 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,218,688
Number of Sequences: 37544
Number of extensions: 175859
Number of successful extensions: 272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)