Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L10
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50797-4|CAA90674.1|  339|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    28   2.9  
M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>Z50797-4|CAA90674.1|  339|Caenorhabditis elegans Hypothetical
           protein T22H6.3 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
 Frame = +3

Query: 141 YIYFTSYKLSKCVVCFLPNYYLNKEV*YHCLMIYVFSYNSILYSPILFNLCVKLFRYTGR 320
           Y  F S ++   V+ +L  +  NK++  + +++ VFS   ++YS ++  L   +    GR
Sbjct: 12  YSGFVSAQIINVVLLYLLFFKANKKLGKYRVLMIVFSIFGMMYS-LIEVLTFPVMFCKGR 70

Query: 321 IVLIIANVLCNLIVNLSFP*LSQY-----------LLHLYYDYLAI 425
            + I ++    L  ++ FP ++ Y            LH YY Y+A+
Sbjct: 71  SLSICSDGPFTLKKSIGFPLIAVYCASFGMCISLLALHFYYRYIAV 116


>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 150 FTSYKLSKCVVCFLPNYYLNKEV*YHCLMIYVFSY 254
           + +++LSK V  F   + L+ EV ++CL+ ++F +
Sbjct: 142 YLAFQLSKAVDIFTHTWSLSVEVQFYCLVPFIFLF 176


>M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical
           protein B0303.11 protein.
          Length = 903

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 153 TSYKLSKCVVCFLPNYYLNKEV*YHCLMIYVFSYNSILY 269
           T   L+    CF+ + Y N+ +      I+  SY S+LY
Sbjct: 400 TLLSLAISAACFIASLYTNRHLALFIASIFAISYCSLLY 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,996,220
Number of Sequences: 27780
Number of extensions: 199715
Number of successful extensions: 470
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)