Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L09
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    27   1.4  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   4.2  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    25   7.3  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    25   7.3  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    25   7.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.7  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    25   9.7  

>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -3

Query: 419 LYYDFMVERTLTIHVIDDTRHTAFLMVL*VQDESGHLP----VNIRQAWSVI 276
           LY+D +V RT+  +   D + TAF++++  Q E   +     V +  AW+ I
Sbjct: 307 LYHDKLVARTILANFRSDIKGTAFVLIMTEQFEKLVIEEDDGVYVAHAWAAI 358


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 131 SGHLVLFTLKPFLN*LNILFYKTLFRISF 45
           + H++LF LKPF+  L +L   T   +SF
Sbjct: 147 NSHMLLFYLKPFVIALPVLIGVTCILLSF 175


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 207 PELMKVTVPMDEDRRISYL 263
           PEL+K+  PM+ED  +S L
Sbjct: 97  PELLKLPGPMEEDEVVSLL 115


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 367 TRVTPHFSWSCKSKTKVDTFP 305
           + + PH SWS KS+ K+   P
Sbjct: 122 SEIHPHMSWSSKSEGKMFKIP 142


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = -3

Query: 470 LTKRTLNGDRFPTTVTTLYYDFMVERTLTIHVIDDTRHTAFLMVL*VQDESGHLPVNIRQ 291
           L    LN ++F +     +YDF+ +    I+ +DD     F  V  +   S   P ++ +
Sbjct: 101 LADTLLNSNKFLSAFGPAFYDFLEKDESYINYLDDDSKLLFARVFALCSSSS--PCSVAK 158

Query: 290 AWSV 279
           A+++
Sbjct: 159 AFTL 162


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +3

Query: 288 CLPDVDGKVSTFVLDLQDHEKCGVTRVINNM----NGQRTFYHKIVIESGDGSRETVTVK 455
           C P+VD      VL  Q      ++    ++    + QR  YH++    GDGS+   T  
Sbjct: 771 CTPEVDSSYKPKVLVSQIWNSIIISLYREHLLAIEHVQRLIYHQVNSLDGDGSKTLKTPT 830

Query: 456 CSLSQK 473
             +SQ+
Sbjct: 831 FFVSQE 836


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 234 MDEDRRI-SYLDQLKDYRPCLPDV 302
           M +D+ + ++L Q+ DY P +PDV
Sbjct: 87  MAKDKTLENFLAQMDDYSPLIPDV 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,702
Number of Sequences: 5004
Number of extensions: 46714
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)