Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L09
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0797 - 27789692-27789715,27790304-27790417,27791020-277911... 29 1.8
11_04_0396 + 17219542-17219568,17219608-17219732,17220250-17220400 29 2.4
07_03_0295 - 16345592-16345947,16346265-16346697 28 4.3
05_03_0411 - 13622241-13622591,13622838-13623476,13624031-136241... 28 5.6
05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788... 27 7.5
12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404 27 9.9
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146... 27 9.9
04_03_1016 + 21742060-21742219,21742301-21742596,21742705-217427... 27 9.9
>03_05_0797 -
27789692-27789715,27790304-27790417,27791020-27791199,
27791285-27791376,27791797-27791908,27791990-27792208,
27792556-27792592,27793719-27793819,27793963-27794058,
27794312-27794437,27794555-27794869
Length = 471
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -1
Query: 253 IRLSSSIGTVTFISSGVHSIWTCDPLAIAAWIKHKHNSNLRAA 125
+R +++ T+ F +S+W DP AW+ KH+++LR+A
Sbjct: 42 LRDAATAATIAFDYQ--YSLWGLDP-GTPAWVSAKHDAHLRSA 81
>11_04_0396 + 17219542-17219568,17219608-17219732,17220250-17220400
Length = 100
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 420 SGDGSRETVTVKCSLSQKLRVITRREVKP 506
+G+G TV+ +LS KLR++ RE++P
Sbjct: 48 NGEGYVNNSTVRTALSSKLRMVESREMEP 76
>07_03_0295 - 16345592-16345947,16346265-16346697
Length = 262
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 73 KRIFNQFKKGFKVNNTRWPL*DYCCVCV 156
K++ +QF K F+ RW + D VC+
Sbjct: 82 KKMLHQFNKNFRTPQARWVIQDEIAVCL 109
>05_03_0411 -
13622241-13622591,13622838-13623476,13624031-13624177,
13624364-13624486,13624609-13624784,13625168-13625444
Length = 570
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 202 HSIWTCDPLAIAAWIKHKHNSNLRAAI 122
H+I+ DP AW+K+ S LRAA+
Sbjct: 291 HNIFWEDPKYTPAWVKNLTGSQLRAAV 317
>05_05_0357 +
24377989-24378039,24378601-24378632,24378724-24378818,
24379165-24379237,24379804-24379867,24380465-24380732,
24381132-24381202,24382028-24382084,24382302-24382403,
24382544-24382588,24383616-24383693,24384350-24384400,
24384475-24384556,24384883-24384956,24386093-24386144,
24386230-24386288,24386380-24386456,24386692-24386778,
24387011-24387101
Length = 502
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 150 LCFIQAAIAKGSQVQIECTPELMKVTVPMDEDRRISYLDQLK 275
+CF+ + + GS VQ+ L+ + +D +R + LDQ++
Sbjct: 103 ICFLNSMMDLGSDVQVRAAGGLLAI---LDNERLLDTLDQME 141
>12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404
Length = 335
Score = 27.1 bits (57), Expect = 9.9
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 234 MDEDRRISYLDQLKDYRPCLPDVDGKVSTFVLDLQDHEKCGVTRVINNMNGQRTF-YHKI 410
+DE R +S +Q+ + D +GKV LDLQ E+C + + G +H +
Sbjct: 48 IDESRDVSIKEQMGVILRFVND-EGKVMERFLDLQHIERCTAIALKEALFGCLVAKHHDV 106
Query: 411 VIESGDGSRETVTVKCSLSQK 473
++E + +T + L+Q+
Sbjct: 107 LLEKVENGE--ITTRSGLNQE 125
>12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,
1468488-1469515,1470005-1470552,1470656-1470695,
1473774-1475196
Length = 1085
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/86 (19%), Positives = 42/86 (48%)
Frame = +3
Query: 246 RRISYLDQLKDYRPCLPDVDGKVSTFVLDLQDHEKCGVTRVINNMNGQRTFYHKIVIESG 425
R+ +++D+L+ + P+ + D+++H++C + QR K++ +SG
Sbjct: 998 RKTNWIDKLQKTKKRKPEEKAEEENLQTDVEEHQECEAISSYAQLLLQR-IRLKLLCQSG 1056
Query: 426 DGSRETVTVKCSLSQKLRVITRREVK 503
++ VT++ + +V R V+
Sbjct: 1057 LMLQKYVTIRYTQELTAQVTMFRRVR 1082
>04_03_1016 +
21742060-21742219,21742301-21742596,21742705-21742758,
21743480-21743503
Length = 177
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 231 PMDEDRRISYLDQLKDYRPCLPDVDGKVSTFVLDLQD 341
P DE+ I +L + PC PD+ V T +L+L D
Sbjct: 15 PSDEELIIHFLRRKASLLPCQPDI---VPTLILNLYD 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,705,773
Number of Sequences: 37544
Number of extensions: 298039
Number of successful extensions: 556
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -