Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L08
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine re...    30   0.98 
AL032675-1|CAA21779.1|  963|Caenorhabditis elegans Hypothetical ...    28   3.9  
U70857-7|AAB09170.1|  208|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U50300-2|AAC48102.1|  335|Caenorhabditis elegans Serpentine rece...    27   9.1  

>AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein133 protein.
          Length = 372

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +1

Query: 292 SSHRIVC*LIISKYDFIYRILIFKMFII-NKKLRINNI 402
           SSH ++C L+ S+Y    +ILIF + ++ NKK+ I+++
Sbjct: 324 SSHFVICMLMSSQYRNNAKILIFNVELLKNKKVSISSL 361


>AL032675-1|CAA21779.1|  963|Caenorhabditis elegans Hypothetical
           protein VT23B5.1 protein.
          Length = 963

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 206 WQALLTTRRGNWGRHITKNIAK-GLNKTQAPNHAMR 102
           W+A LT  RG WG      + K  L+ T+ P   MR
Sbjct: 831 WEAELTRERGIWGPERASKLEKFKLDLTEGPTTRMR 866


>U70857-7|AAB09170.1|  208|Caenorhabditis elegans Hypothetical
           protein C10G8.2 protein.
          Length = 208

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 304 FCVKIKYNNIIMYLKYYDY 248
           FC K KYN +I  + YY+Y
Sbjct: 181 FCCKKKYNLLIKDILYYEY 199


>U50300-2|AAC48102.1|  335|Caenorhabditis elegans Serpentine
           receptor, class x protein2 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 319 SINTLFCVKIKYNNIIMYLKYYDYNICNNYFKYIQMEYGKLF*QLEGV 176
           +I  LFC+ I +   +MY+  Y    C   F ++ + Y   + Q++G+
Sbjct: 127 NICKLFCIIIPFCFFLMYMAQYGTPCCFFVFDHVVLSYS--YNQIDGL 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,166,632
Number of Sequences: 27780
Number of extensions: 138025
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)