Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L07
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763...    30   0.97 
02_02_0293 - 8639826-8639852,8640161-8640361,8641165-8641611,864...    29   3.0  
09_04_0164 + 15265878-15268701,15268782-15269200                       28   3.9  
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142     28   5.2  
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338...    27   6.8  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    27   6.8  
09_06_0041 - 20440266-20441381                                         27   9.0  
03_05_1081 + 30235677-30236474                                         27   9.0  

>08_02_0546 -
           18474217-18475133,18475207-18475396,18475870-18476313,
           18476629-18477495,18478858-18479367
          Length = 975

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 99  ITLTWIITVYKQHFHNLCGAW 37
           +T TW I    Q FHNLC AW
Sbjct: 314 LTKTWPILGINQMFHNLCFAW 334


>02_02_0293 -
           8639826-8639852,8640161-8640361,8641165-8641611,
           8641726-8641816,8642949-8643949
          Length = 588

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 234 REDPSAATDG*RAPVSFRQPGSGSVRTEETTVWFIG 341
           R D  AA +  RA V   Q G+G +R     +WF+G
Sbjct: 305 RRDSGAADELQRAHVVAGQIGAGRLRAPAGAIWFVG 340


>09_04_0164 + 15265878-15268701,15268782-15269200
          Length = 1080

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
 Frame = +1

Query: 205  CRSFQQIKPPEKTLAPQPTVKGLLSRFGSQAQALFAPKKP---RFGSSVAIHKLRETKWF 375
            C S   I PPE      PT KG +  FG     +   KKP    F + +++H     KW 
Sbjct: 933  CGSIGYI-PPEYGYGSNPTTKGDVYSFGVLVLEMVTRKKPIDDMFDAGLSLH-----KWV 986

Query: 376  KHDEQNILCAVLETGFILEVR 438
            K+       AV++      VR
Sbjct: 987  KNHYHGRADAVVDPALARMVR 1007


>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
          Length = 534

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 235 EKTLAPQPTVKGLLSRFGSQAQALFAPKKPRFGSSV-AIHKLRETKWFKHDEQNILCAVL 411
           E+ L P PT  GL   F +    L   ++PR    + A+H+    + + H++ ++     
Sbjct: 218 EQRLTPVPTPPGLTFAFPNSEVVLLRRRRPREAFFLAALHRPTLCRQYTHEQFDLHLYSS 277

Query: 412 ETG 420
           ETG
Sbjct: 278 ETG 280


>02_05_0336 +
           28033315-28033365,28033580-28033585,28033798-28033884,
           28034741-28034830,28035736-28037778,28037916-28038062,
           28038148-28038560,28038656-28038755
          Length = 978

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 398 SMFCSSCLNHLVSRSLWIATDEPNR 324
           SMFC+SC N+ VSR+  +A D   R
Sbjct: 580 SMFCNSCSNNKVSRAA-LAPDRSKR 603


>01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,
            8048455-8048540,8048698-8048983,8049063-8049205,
            8049308-8049508,8049626-8049754,8050463-8050738,
            8050823-8051098,8051364-8052364,8052452-8052634,
            8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -2

Query: 392  FCSSCLNHLVSRSLWIATDEPNRGFFGANRA*AW---LPKRDRSPLT 261
            FC  C + +VS S W+ T   N  FF   R  A     P +DR P T
Sbjct: 949  FCKHCHHPIVSGSSWVCTSCKN--FFLCERCYAEELNTPLKDRHPAT 993


>09_06_0041 - 20440266-20441381
          Length = 371

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 202 TCRSFQQIKPPEKTLAPQPTVKGLLSRFGSQAQALFAPKKPR 327
           +CR+++ + P  + L    +   L+S + S A+ALF P+  R
Sbjct: 62  SCRAYRALLPASRRLLASQSPLLLVSLYPSFAEALFHPRLRR 103


>03_05_1081 + 30235677-30236474
          Length = 265

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
 Frame = +1

Query: 217 QQIKPP-----EKTLAPQPTVKG--LLSRFGSQAQALFAPKKP 324
           Q + PP     + T  P P  K   L++RF  Q QAL A ++P
Sbjct: 57  QPVPPPPAQLHDPTAPPSPIAKAAELVTRFREQGQALIAARRP 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,297,100
Number of Sequences: 37544
Number of extensions: 321158
Number of successful extensions: 883
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)