Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L07
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical...    29   2.6  
AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical...    27   6.1  
AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical...    27   6.1  

>AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical
           protein Y87G2A.18 protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 452 NGSSALTSRMNPVSRTAQSMFCSSCLNHLVS 360
           N S  +TSR +P +     M C  C NH+VS
Sbjct: 27  NDSRYITSRTSPYNVMPIEMDCPHCQNHIVS 57


>AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16c protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 362 RPSGLNMMNRTYFVPSSKPDSFSKSEPRTRCRRTLISLQITI 487
           RP    +  R   V S +PD     EP T  RR ++  Q TI
Sbjct: 321 RPKPTVLGERQALVASKRPDRVLMQEPSTSSRRGVLKRQHTI 362


>AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16a protein.
          Length = 727

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 362 RPSGLNMMNRTYFVPSSKPDSFSKSEPRTRCRRTLISLQITI 487
           RP    +  R   V S +PD     EP T  RR ++  Q TI
Sbjct: 66  RPKPTVLGERQALVASKRPDRVLMQEPSTSSRRGVLKRQHTI 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,486,415
Number of Sequences: 27780
Number of extensions: 255343
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)