Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L05
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   4.9  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   6.5  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   8.6  

>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 315 PGKFKSSVLSFKPKYLLRSLKNLLHPNLKIITHGFPI 205
           PG+      ++K   LL   K LL PN+K+   GFP+
Sbjct: 176 PGELAGLYEAWKSHGLLDWSK-LLEPNVKLAREGFPV 211


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 136 RNVDQDKWNYKFLKWYLANILSC 68
           RNV +  W  + ++WY   I SC
Sbjct: 171 RNVPEKAWANRCVEWYFRYINSC 193


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 80  VGEIPLEKLIVPLILVDVSSIVYDDPNFV 166
           VGE P E + +  +L  V   +Y  P+FV
Sbjct: 215 VGEFPFEDVTISNVLSRVCKGIYTIPSFV 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,746
Number of Sequences: 5004
Number of extensions: 37135
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)