Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L05
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0649 + 4831209-4831620,4833356-4833400,4833612-4833684,483...    29   2.1  
02_05_0117 - 25986555-25987148                                         28   3.7  
08_02_0179 - 13904027-13904125,13904177-13904259,13906019-139060...    28   5.0  
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324...    27   6.5  
04_04_0064 + 22446902-22447045,22448323-22448380,22448398-224485...    27   6.5  
07_03_0656 - 20339200-20339368,20339847-20339998,20340106-203402...    27   8.7  

>02_01_0649 +
           4831209-4831620,4833356-4833400,4833612-4833684,
           4833877-4833974,4834160-4834230,4834830-4834955
          Length = 274

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 26  HGGTHMDAPRHFTR----TGQYVGEIPLEKLIVPLILVD 130
           H GTH+DAP H  +     G  V ++ L+ L  P +LVD
Sbjct: 106 HMGTHVDAPGHMNQGHFAAGLDVDKLDLDLLNGPTLLVD 144


>02_05_0117 - 25986555-25987148
          Length = 197

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 79  ILSCSSKMAWCIHVRAAVLRRC 14
           IL+C S +A+C+H  A  L RC
Sbjct: 69  ILACVSLLAFCLHAAARCLIRC 90


>08_02_0179 -
           13904027-13904125,13904177-13904259,13906019-13906066,
           13906215-13906308,13907114-13907184,13910157-13910343,
           13910714-13910717,13910847-13910919,13911044-13911088,
           13912046-13912442
          Length = 366

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 26  HGGTHMDAP----RHFTRTGQYVGEIPLEKLIVPLILVDV 133
           H GTH+DAP    +H+   G  V  + LE L    +LVDV
Sbjct: 101 HTGTHVDAPGHVFQHYFDAGFDVDSLDLEVLNGLALLVDV 140


>09_03_0179 -
           13131404-13131514,13131834-13131920,13132316-13132448,
           13133079-13133319,13133423-13133540,13133546-13133731,
           13133864-13134049,13134443-13134652,13135171-13135347,
           13135823-13135964,13136385-13136927,13137565-13138022
          Length = 863

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 336 SATSKLNPGKFKSSVLSFKPKYLLRSLKNLLHPNL 232
           S   + N GKF + V+ FK K ++  L N+L  N+
Sbjct: 618 STALQYNSGKFTAVVIVFKKKSVIMILYNMLSQNV 652


>04_04_0064 +
           22446902-22447045,22448323-22448380,22448398-22448528,
           22449267-22449332,22449423-22449510,22450088-22450158,
           22450243-22450302,22450418-22450523,22450649-22450686,
           22450990-22451082,22451156-22451220,22451633-22451645,
           22451733-22451813,22452200-22452308,22452423-22452544
          Length = 414

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 68  TGQYVGEIPLEKLIVPLILVDVSSIVYD 151
           TGQ V E+ +E L +   LV++S  +YD
Sbjct: 282 TGQQVNEVHMEFLSISEFLVEISDDLYD 309


>07_03_0656 -
           20339200-20339368,20339847-20339998,20340106-20340261,
           20340658-20340916,20341134-20341250,20341777-20341839,
           20341935-20342113
          Length = 364

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 420 YTKIASSAGLYNIEPV 467
           YT  ASS+ LYN++PV
Sbjct: 95  YTSAASSSALYNVQPV 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,492,671
Number of Sequences: 37544
Number of extensions: 219989
Number of successful extensions: 469
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)