Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L05
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    28   4.5  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    28   4.5  
Z81575-4|CAB04630.1|  320|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AC024817-41|AAY86306.1|  152|Caenorhabditis elegans Hypothetical...    27   5.9  

>AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical
           protein F49F1.1 protein.
          Length = 265

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 57  WRGASMCVPPCSDAAKSLC 1
           W G S  + PCSD  KSLC
Sbjct: 93  WDGCSHFLAPCSDDIKSLC 111


>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 389  LTPHRHQYQRYFCMTRSTRPLPNLILENSNHLYYHSN 279
            ++PHR  +    C  R T P P   L+  N    H N
Sbjct: 1465 VSPHRASHPGRLCQPRPTPPPPECRLDGGNQCKVHLN 1501


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 389  LTPHRHQYQRYFCMTRSTRPLPNLILENSNHLYYHSN 279
            ++PHR  +    C  R T P P   L+  N    H N
Sbjct: 2049 VSPHRASHPGRLCQPRPTPPPPECRLDGGNQCKVHLN 2085


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 389  LTPHRHQYQRYFCMTRSTRPLPNLILENSNHLYYHSN 279
            ++PHR  +    C  R T P P   L+  N    H N
Sbjct: 1465 VSPHRASHPGRLCQPRPTPPPPECRLDGGNQCKVHLN 1501


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 389  LTPHRHQYQRYFCMTRSTRPLPNLILENSNHLYYHSN 279
            ++PHR  +    C  R T P P   L+  N    H N
Sbjct: 2049 VSPHRASHPGRLCQPRPTPPPPECRLDGGNQCKVHLN 2085


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 389  LTPHRHQYQRYFCMTRSTRPLPNLILENSNHLYYHSN 279
            ++PHR  +    C  R T P P   L+  N    H N
Sbjct: 2049 VSPHRASHPGRLCQPRPTPPPPECRLDGGNQCKVHLN 2085


>Z81575-4|CAB04630.1|  320|Caenorhabditis elegans Hypothetical
           protein R08H2.4 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 104 LIVPLILVDVSSIVYDDPNFVLYKXXXXXXXXYNMGKPCVMIFKF 238
           +I+PLIL+  SS+++   + VL          +  G P VMIF +
Sbjct: 247 IIIPLILLH-SSVIFWFHSQVLNNFITIMFSSFGTGSPVVMIFVY 290


>AC024817-41|AAY86306.1|  152|Caenorhabditis elegans Hypothetical
           protein Y54G2A.50 protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 203 NMGKPCVMIFKFGWSKFFKDRKRYLGLND--NTDDLNFP-GLS 322
           N  K C ++F FG+ + F D +    LND   TD   FP GLS
Sbjct: 108 NSIKQCFIVFIFGFERRFGDGRHCHYLNDKKRTDLRTFPSGLS 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,907,678
Number of Sequences: 27780
Number of extensions: 202365
Number of successful extensions: 485
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)