Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L05
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    28   0.064
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    28   0.064
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   0.79 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   0.79 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   0.79 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.4  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   3.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   3.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   3.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   3.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.6  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 0.064
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 351 TKISLVLVSMWGQLIPVLVKIMLYTKIASS 440
           TK+ +  + +W  +IP++  I+ Y+++ SS
Sbjct: 217 TKVFVTCIFIWAYVIPLIFIILFYSRLLSS 246


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 0.064
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 351 TKISLVLVSMWGQLIPVLVKIMLYTKIASS 440
           TK+ +  + +W  +IP++  I+ Y+++ SS
Sbjct: 217 TKVFVTCIFIWAYVIPLIFIILFYSRLLSS 246


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = +2

Query: 293 TDDLNFPGLSLE 328
           T++LNFPG+S+E
Sbjct: 440 TEELNFPGVSIE 451


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = +2

Query: 293 TDDLNFPGLSLE 328
           T++LNFPG+S+E
Sbjct: 440 TEELNFPGVSIE 451


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = +2

Query: 293 TDDLNFPGLSLE 328
           T++LNFPG+S+E
Sbjct: 66  TEELNFPGVSIE 77


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 75  CPVLVKWRGASMCV 34
           CP+ V WRG   C+
Sbjct: 246 CPIKVSWRGNYSCL 259


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 75  CPVLVKWRGASMCV 34
           CP+ V WRG   C+
Sbjct: 297 CPIKVSWRGNYSCL 310


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 75  CPVLVKWRGASMCV 34
           CP+ V WRG   C+
Sbjct: 246 CPIKVSWRGNYSCL 259


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 94  WYLANILSCSSKMAW 50
           W+  N+L  SSKM W
Sbjct: 123 WHGDNMLEVSSKMPW 137


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 324 WKWPSGSCHTK 356
           W  PSG CH K
Sbjct: 240 WYLPSGGCHCK 250


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 94  WYLANILSCSSKMAW 50
           W+  N+L  SSKM W
Sbjct: 139 WHGDNMLEVSSKMPW 153


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 8   DFAASEHGGTHMDAPRHFTRTGQYVGEIPLEKL 106
           D  A+ +GG +      F +TG+ + E+  E L
Sbjct: 261 DLIATCYGGRNRKICEAFVKTGKKISELEKEML 293


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 94  WYLANILSCSSKMAW 50
           W+  N+L  SSKM W
Sbjct: 196 WHGDNMLEVSSKMPW 210


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 281 LNDNTDDLNFPGLSLEVAEW 340
           L +  D L  P L+LEV EW
Sbjct: 511 LENILDMLVLPKLTLEVEEW 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,378
Number of Sequences: 438
Number of extensions: 2881
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)