Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L04
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 122 3e-29
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 58 1e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 57 1e-09
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 56 4e-09
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 52 4e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 51 1e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 51 1e-07
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 49 4e-07
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 48 1e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 8e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 45 8e-06
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 44 1e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 44 1e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 2e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 43 3e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 43 3e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 43 3e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 43 3e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 3e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 3e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 39 4e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 38 0.001
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 38 0.001
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 38 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 37 0.002
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 35 0.007
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 35 0.009
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 34 0.012
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 33 0.036
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.062
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.062
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 32 0.062
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 31 0.14
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.19
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 29 0.33
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.0
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 1.8
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 26 3.1
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 4.1
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 122 bits (295), Expect = 3e-29
Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Frame = +1
Query: 76 NNDNFAQDITTDNQLNGNSEHGGGDGQDNSAE-APGRDDDRKLFVGGLSWETSDKELRDH 252
+ +N D +NQ +DN+ E +P +D K+F+GGL+WET+D LRD+
Sbjct: 123 DGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDY 182
Query: 253 FSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGEHTINSKKVDPKKAKARH 432
F +GE+ V D TGRSRGF F+ FK P +++VM+ EH ++ K +DPK+A R
Sbjct: 183 FEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPRE 241
Query: 433 -----GKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFD 537
K+FVGG+ + +++E +NFF+ FG +++ + D
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMD 281
Score = 61.3 bits (142), Expect = 9e-11
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Frame = +1
Query: 112 NQLNGNSEHGGGDGQDNSAEAPGRDDDR--KLFVGGLSWETSDKELRDHFSAYGEIESIN 285
N++ H G D P + ++ K+FVGG+ + +++E R+ F+ +G +
Sbjct: 218 NEVMSKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDAT 277
Query: 286 VKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGEHTINSKKVDPKKA 420
+ D +TGR RGF F+ ++ +++ M+ TI+ K V+ K+A
Sbjct: 278 LMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 57.6 bits (133), Expect = 1e-09
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Frame = +1
Query: 163 SAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK 342
S ++ ++ LFVG L +ET+D +L++HF G+I + + T +TG+ +GF F+ F
Sbjct: 218 SIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFP 277
Query: 343 APDSIDKVMAAGEHT-------INSKKVDPKKAKARHGK 438
D+ K M G ++ SK++ K AR G+
Sbjct: 278 DIDTCMKAMELGHNSWRLEYGEDRSKRMRNKSPMARSGR 316
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 57.2 bits (132), Expect = 1e-09
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 25/146 (17%)
Frame = +1
Query: 175 PGRDDDRK--LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP 348
P +D + +FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 349 DSIDKVMAA-GEHTINSKKV-----DPKK------AKARHGK-----------IFVGGLS 459
++ +AA G I+ + V +P+ A+ R G +FVG LS
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 460 SEISDDEIKNFFSNFGNIIEVEMPFD 537
++D++ F G+I + +P D
Sbjct: 375 FNATEDDLSTAFGGCGDIQSIRLPTD 400
Score = 54.0 bits (124), Expect = 1e-08
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +1
Query: 199 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 378
+FVG LS+ ++ +L F G+I+SI + TDP +GR +GF ++ F DS K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 379 EHTI 390
H I
Sbjct: 428 GHFI 431
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 55.6 bits (128), Expect = 4e-09
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Frame = +1
Query: 163 SAEAPGRDDDRK--LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIV 336
S G+++DRK LFVG L ++S + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 337 FKAP--DSIDKVMAAGEHTI-NSKKVDPKKAKARHGK 438
F P D I K + HTI +K++ + GK
Sbjct: 140 FINPKTDVISKALKF-HHTIYKERKINIELTAGGGGK 175
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 52.4 bits (120), Expect = 4e-08
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Frame = +1
Query: 157 DNSAEAPGRD----DDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGF 324
DN EA D D + ++VG + + + +EL+ HF++ G + + + D TG +GF
Sbjct: 39 DNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGF 98
Query: 325 AFIVFKAPDSIDKVMAAGEHTINSK--KVDPKK 417
A+I F P + + ++ + KV PK+
Sbjct: 99 AYIEFSEPSLVPNALLLNGSMLHERPLKVTPKR 131
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 51.2 bits (117), Expect = 1e-07
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +1
Query: 157 DNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIV 336
D+ + +D R +FVG L++E ++ L +F G I+ + + DP T +GFA+I
Sbjct: 258 DSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
Query: 337 FKAPDSIDKVMAAGE 381
FK +DK + E
Sbjct: 318 FKDTMGVDKALLLNE 332
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 51.2 bits (117), Expect = 1e-07
Identities = 26/67 (38%), Positives = 38/67 (56%)
Frame = +1
Query: 139 GGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSR 318
G G +S RDD L V LS +T ++ELRD F +G I+ + + D TGR++
Sbjct: 184 GSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAK 243
Query: 319 GFAFIVF 339
GFAF+ +
Sbjct: 244 GFAFVSY 250
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 49.2 bits (112), Expect = 4e-07
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Frame = +1
Query: 199 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPDSI 357
L+VG L ++ L + F++ G + SI V D T RS G+A++ F KA D +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 358 DKVMAAGEH-TINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPF 534
+ + G I + DP K G +F+ L I + + + FS FG I+ ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 535 D 537
D
Sbjct: 202 D 202
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 199 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVM 369
LF+ L E D+ L+ FSA+G I S + TD G+S+GF F+ + P+ +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 47.6 bits (108), Expect = 1e-06
Identities = 20/53 (37%), Positives = 34/53 (64%)
Frame = +1
Query: 184 DDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK 342
D + +F+ LS++T + ++ F+ YG IE I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 8e-06
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +1
Query: 187 DDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKV 366
D +++G L ++ ++ ++ FS +GE IN+ D TG+S+GFAF+ K D V
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFL--KYEDQRSTV 86
Query: 367 MAAGEHTINSKKVD 408
+A T N K +D
Sbjct: 87 LAVDNMT-NVKLLD 99
Score = 28.7 bits (61), Expect = 0.58
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFD 537
I++G L ++++D+I FS FG +++ + D
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRD 65
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.8 bits (101), Expect = 8e-06
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 133 EHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGE-IESINVKTDPNTG 309
E G G G A + VG LS++ ++ +L D F GE + SI + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPSEPPFTAHVGNLSFDLTENDLGDFF---GEGVTSIRLVIDPLTE 130
Query: 310 RSRGFAFIVFKAPDSIDKVMAAGEHTINSKKVDPKKAKAR 429
RSRGF ++ F+ D++ +A + + V A+ R
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +1
Query: 409 PKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMP 531
P+ A + +FVGGLS +S++E+K F NFG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 37.5 bits (83), Expect = 0.001
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +1
Query: 106 TDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHF-SAYGEIESI 282
T++ N GGG + + ++A + +FVG LS ++ ++ F S Y +S
Sbjct: 161 TNHLFKLNWASGGGLREKSISKA----SEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSA 216
Query: 283 NVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGE 381
+ TDP T SRG+ F+ F D D+ A E
Sbjct: 217 KIMTDPQTNVSRGYGFVRF--TDENDQKSALAE 247
Score = 30.7 bits (66), Expect = 0.14
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 199 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTG 309
+FVGGLS S++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.0 bits (99), Expect = 1e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +1
Query: 199 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK----APDSIDKV 366
++VG L W TSD+ L D F+ G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Score = 31.9 bits (69), Expect = 0.062
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 376 GEHTINSKKV-DPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 528
GEHT + + +K + +++VG LS ++ E+K F GN++ E+
Sbjct: 46 GEHTERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEI 97
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 43.6 bits (98), Expect = 2e-05
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 109 DNQLNGNSEHGGGDGQDNSAEAPGRDD-DRKLFVGGLSWETSDKELRDHFSAYGEIESIN 285
+++++ N+E D ++ + G ++ LFV G++ + EL+ FS +G + +
Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 286 VKTDPNTGRSRGFAFIVF 339
+ +P T SRGF F+ F
Sbjct: 132 IMREPVTKASRGFGFLSF 149
Score = 33.9 bits (74), Expect = 0.015
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 358 DKVMAAGEHTINSKKVD---PKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 528
D+V E T KK P+ ++ +FV G++S + +DE++ FS FG + V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 43.2 bits (97), Expect = 3e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 199 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVF 339
LFV L+++T +L + FS G I+ V T+P TG +RG+ F+ F
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 39.5 bits (88), Expect = 3e-04
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 133 EHGGGDGQDNSAEAPGRDDDR---KLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 303
+ G NS RD++ +FV L +E +++EL +HF +G + + DP
Sbjct: 254 DSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPA 313
Query: 304 TGRSRGFAFIVFK 342
T RS G FI F+
Sbjct: 314 TDRSLGRGFIKFR 326
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIKNFFSNFGNI 513
+FV L+ + D++ NFFS+ G I
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPI 31
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 43.2 bits (97), Expect = 3e-05
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +1
Query: 157 DNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIV 336
D + + G + ++FV +S + ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNENSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCIS 141
Query: 337 FKAPDSI 357
F SI
Sbjct: 142 FDKRSSI 148
Score = 25.8 bits (54), Expect = 4.1
Identities = 6/31 (19%), Positives = 21/31 (67%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 528
++FV +S ++ ++++ F +FG + ++++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDL 125
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 42.7 bits (96), Expect = 3e-05
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 20/168 (11%)
Frame = +1
Query: 94 QDITTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEI 273
+D+ D++ + + +S + D R +FV L+ + +EL D F G +
Sbjct: 207 EDLRDDDRSHERKRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPV 266
Query: 274 ESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMA-AGEHTINSKKV-----DPKKAKARHG 435
+ D +GRS+G A++ F DS+ +A +G+ + + K KAR
Sbjct: 267 RDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREA 326
Query: 436 --------------KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFD 537
++ V + ++D+++K F FG+I V + D
Sbjct: 327 AELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD 374
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/75 (26%), Positives = 42/75 (56%)
Frame = +1
Query: 199 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 378
+FVG + ++ S++++ + F+ G +++ + DP TG +G+ F F DS MA
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFF--DSETTAMAV- 65
Query: 379 EHTINSKKVDPKKAK 423
+N+ ++ P+K +
Sbjct: 66 -RKLNNSELGPRKIR 79
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.5 bits (88), Expect = 3e-04
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 196 KLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDK 363
+LFVG L + +D+ L FS Y + V D G++RGF F+ FK D K
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLK 85
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.5 bits (88), Expect = 3e-04
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +1
Query: 199 LFVGGLSWETSDKELRDHFSAYGE-IESINVKTDPNTGRSRGFAFIVFKAPDSID-KVMA 372
LFVG L ++ L D FSA G+ +++ V D N GRS+G+ F+ + + ++ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 373 AGEHTINSKKVDPKKAKARHGK 438
+ +K + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.1 bits (87), Expect = 4e-04
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +1
Query: 103 TTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESI 282
T +Q+ + + + S + DD ++FVG LS T E+R F G + +
Sbjct: 14 TVQDQVEASVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKV 73
Query: 283 NVKTDPNTGRSR----GFAFIVFKAPDSIDKVMAAGEHTINSKKVDPKK 417
+ +R G AF+ F + +DK + T+N K +D ++
Sbjct: 74 TIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
Score = 33.1 bits (72), Expect = 0.027
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +1
Query: 349 DSIDKVMAAGEHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 528
D ++ + A H + P + +A ++FVG LS+ EI++ F G + +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 529 PF 534
PF
Sbjct: 76 PF 77
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 37.9 bits (84), Expect = 0.001
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 22/133 (16%)
Frame = +1
Query: 157 DNSAEAPGR--DDDRKLFVGGLSWETSDKELRDHFSAYGEIESI----------NVKTDP 300
++ PG+ D+ ++VG + SD+E+ HFS YG++ESI K P
Sbjct: 3 NSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKP 62
Query: 301 NTGRSRG--FAFIVFKAPDSIDKV------MAAGEH--TINSKKVDPKKAKARHGKIFVG 450
G + F+ F +SI++V M G+ TI ++ V+P K + K
Sbjct: 63 FKPPKNGVQYGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKLTDKKFKPNDT 122
Query: 451 GLSSEISDDEIKN 489
+++ + + I+N
Sbjct: 123 SITANVFNPSIQN 135
Score = 35.9 bits (79), Expect = 0.004
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +1
Query: 226 TSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGEHTINSKKV 405
T +L D FS +G I S + PN+G S+G+ F+ F+ I+ + A + T+N V
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR---QIEAAVRA-KDTLNGMMV 450
Query: 406 DPKK 417
K+
Sbjct: 451 GKKR 454
Score = 33.5 bits (73), Expect = 0.020
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 391 NSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNI 513
NSK P + + I+VG + S +SD+EI FS +G +
Sbjct: 3 NSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +1
Query: 199 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 378
L+VG L +K++R +FS +G + + + + TG S+ +AFI F++ D + V+A
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD-VANVVAET 165
Query: 379 EH 384
H
Sbjct: 166 MH 167
Score = 33.1 bits (72), Expect = 0.027
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 379 EHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 528
E TI K + K + + G ++VG L + +++ +FS FG ++ + M
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRM 136
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/81 (19%), Positives = 43/81 (53%)
Frame = +1
Query: 187 DDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKV 366
+ R+L+V + ++ ++K++ F YG++ES+ + N + +GF ++V +
Sbjct: 755 EGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENA 812
Query: 367 MAAGEHTINSKKVDPKKAKAR 429
++A + ++ ++ +K R
Sbjct: 813 LSAAGKQLGNRVLNVVLSKPR 833
Score = 31.5 bits (68), Expect = 0.083
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIKNFFSNFGNIIEV 522
+ V L S+IS++E+K FF + GNII +
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNIIRI 619
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.5 bits (83), Expect = 0.001
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +1
Query: 199 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP 348
++VG + +E +++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPF 534
+FVGGL+S +S+ +++ F FG I+ +++PF
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPF 330
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 35.1 bits (77), Expect = 0.007
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 199 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFI-VFKAPDSIDKVMAA 375
++VG LS+ T+++++ FS GEI I + D T GF F+ F+ D++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 376 GEHTINSKKVDPKKAKARHG 435
+++ + + +A HG
Sbjct: 94 SRTSLDERII---RADLDHG 110
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.7 bits (76), Expect = 0.009
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +1
Query: 199 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK 342
LF+ LS++ + +E+ D F YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 34.3 bits (75), Expect = 0.012
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +1
Query: 190 DRKLFVGGLSWETSDKELRDHFSAYGEIESINV--KTDPNTGRSRGFAFIVFKAPD 351
+++++VGGLS +L FS +G + ++ + K+ P G + FA++ F+ +
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
Score = 34.3 bits (75), Expect = 0.012
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 528
+I+VGGLSS I ++++ FS FG++ +E+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEI 36
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 32.7 bits (71), Expect = 0.036
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 235 KELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP 348
++L + FS +G I+S + + P+T S+G+ F+ F P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +1
Query: 367 MAAGEHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 528
M A E K KK + I+VG L S ++ F FGN + M
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM 51
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.9 bits (69), Expect = 0.062
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +1
Query: 157 DNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIV 336
D+ A+ D K+++ L + ++ + +G++ S + + G S+GF F
Sbjct: 298 DDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCE 357
Query: 337 FKAPDSIDKVMAA--GEHTINSK 399
FK P + ++ G+ T +K
Sbjct: 358 FKNPSDAEVAISGLDGKDTYGNK 380
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.9 bits (69), Expect = 0.062
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFD 537
++F+ L+ ++D++K+ F FG + +V MP D
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPID 357
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.9 bits (69), Expect = 0.062
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 187 DDRKLFVGGLSWETSDKELRDHF-SAYGEIESINVKTDPNTGRSRGFAFIVFKAP 348
++ K+ V L + ++ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 30.7 bits (66), Expect = 0.14
Identities = 17/79 (21%), Positives = 34/79 (43%)
Frame = +1
Query: 223 ETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGEHTINSKK 402
E S R++ GE+E V +P + ++F K+ A +++ ++
Sbjct: 337 EISQVVQRENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFER 396
Query: 403 VDPKKAKARHGKIFVGGLS 459
+DP K A + GG++
Sbjct: 397 IDPAKVSALQQMLIAGGVN 415
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.3 bits (65), Expect = 0.19
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 193 RKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 303
R +F+G L +KE+ + F +G+IE I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIKNFFSNFGNIIEVEM 528
+F+G L S + EI+ F FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 29.5 bits (63), Expect = 0.33
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +1
Query: 169 EAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP 348
E P LF+ G+ E +D ++R HF YG ++S+ + R++ AF+ FK
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTR 257
Query: 349 DSIDKVMAAGEHTINSKKVDPKKAKARHGK-IFVGGLSSEISDDEI 483
S + +AA + ++ + K + GK +GG E+ + ++
Sbjct: 258 SSAE--IAAAASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 193 RKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 303
R +F+G L ++ E+R+ +G I+ I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 160 NSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 303
N A A R +++G + + L++ F +GEIE +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIKNFFSNFGNIIEVEM 528
+F+G L + I++DEI+ FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 1.8
Identities = 8/37 (21%), Positives = 20/37 (54%)
Frame = +1
Query: 403 VDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNI 513
+ P K +F+GG++ + + +++ F FG++
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSV 432
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 316 RGFAFIVFKAPDSIDKVMAAGEHTINSKK 402
RGFA IVF A S ++V G H +N K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 4.1
Identities = 7/31 (22%), Positives = 21/31 (67%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 528
++FVG + + + +++ +FF +G I++ ++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL 35
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 190 DRKLFVGGLSWETSDKELRDHFSAYGEI 273
+ +LFVG + + + +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.136 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,291
Number of Sequences: 5004
Number of extensions: 42471
Number of successful extensions: 185
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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