Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_L03
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 26 2.2
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 26 2.9
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 6.6
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 6.6
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23... 25 6.6
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 25 6.6
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 6.6
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 24 8.7
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 24 8.7
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|... 24 8.7
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 127 VTHATVSITSNLLRKSEFFCRHFDVNSFNR 38
+T T S NLL FC +FD++ + R
Sbjct: 345 ITFETTSKDGNLLNAIRIFCLYFDLDYYAR 374
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 71 KEFTLPQKVARYRYRCMRYYDVYVTKIFYPSNFYVRLAIIDQN 199
+E + +K ++Y C + + V P N Y RL +ID N
Sbjct: 307 QEAEIEEKRKAFKYECKKLWRKGVA--LRPPNIYQRLGLIDAN 347
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.6 bits (51), Expect = 6.6
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -3
Query: 265 TLIELNVFLLQWAATNFH--RIQIILI 191
TLI+LN+ + QW ++H +QI L+
Sbjct: 235 TLIDLNIRVGQWYTVSYHEGHVQISLL 261
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 97 NLLRKSEFFCRHFDVNSFNRLKVLHVYHCPL 5
NLLR + +C HF +++KV H++ C L
Sbjct: 97 NLLRSTCLYCHHF---KLSKVKV-HLFFCRL 123
>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 374 SVIDRKYCIFTVRSSVIYLTNSASYHFSQSLRT 276
S++D KY RSS +YL N + HF +++
Sbjct: 256 SLVDVKY---VTRSSSVYLLNKSCAHFLSVIKS 285
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 24.6 bits (51), Expect = 6.6
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +2
Query: 53 NIKMSAKEFTLPQKVARYRYRCMRYYDVYVTKIFY----PSNFYVRLAIIDQNDLDSVEV 220
N+K+ A T+P+K+ + V +Y N+ R++ +QNDL + +
Sbjct: 204 NVKLRAI-CTVPRKIVHVLQKNKNLISSAVNAFYYRDPIDENYCDRMSKFNQNDLVTTTI 262
Query: 221 CGGPLKKEDIKLNKCRRL-PF 280
PL + +C+ PF
Sbjct: 263 TFTPLLYAQLYQQRCKTFRPF 283
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 24.6 bits (51), Expect = 6.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 214 HRIQIILIDDCETDIKIGWIKYFSYVNVIVTHATV 110
H++ I L D C D +G +S +I+T +T+
Sbjct: 307 HQLPISLTDTCTFDQVVGKNVKYSKATLIITPSTI 341
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 24.2 bits (50), Expect = 8.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 146 KIFYPSNFYVRLAIIDQNDLDSVEVCGGPLKKEDIKLNKCRR 271
+I P + L + D++ L EVC K+ I L+ C R
Sbjct: 704 RIKVPRSLLTILNLHDRSQLKLFEVCHNSEFKDPINLSNCLR 745
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 162 PIFMSVSQSSIRMIWIRWKF 221
PI+M S S IR+ W R KF
Sbjct: 90 PIWMHGSISFIRLYWFRRKF 109
>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 303
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 261 LLSLMSSFFNGPPQTSTE 208
L +LMSS F+GPP + +
Sbjct: 282 LANLMSSLFSGPPAATNQ 299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,310
Number of Sequences: 5004
Number of extensions: 36783
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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