Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L03
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991...    28   2.8  
12_01_0501 + 3976156-3976292,3976364-3976949                           28   3.7  
04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362...    28   3.7  
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801...    27   4.9  

>03_05_0798 +
           27798095-27798190,27798325-27798366,27799152-27799190,
           27799238-27799420
          Length = 119

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 121 HATVSITSNLLRKSEFFCRHFDVNSFNRLKVL 26
           H  + ++S+++ KS F C+H     FN+LK+L
Sbjct: 20  HTHLGLSSDIISKS-FHCKHGKAYLFNKLKLL 50


>12_01_0501 + 3976156-3976292,3976364-3976949
          Length = 240

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -1

Query: 399 GXVPNNHRIRNRSQVLYIYC*VLGDISYKFCLLSFFPKSQNGKRRHLLSLMSSFFNG 229
           G +   H  + RS ++ I C + G I Y   L     K+++ +   LL  + SF NG
Sbjct: 96  GVLLGAHTHQRRSLIVGILCVIFGTIMYSSPLTIMVVKTKSVEYMPLLLSVVSFLNG 152


>04_01_0272 +
           3624910-3625247,3625286-3625853,3625920-3626895,
           3627053-3627087
          Length = 638

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 244 FLLQWAATNFHRIQIILIDDCETDIKIGWIKYFSYVNVI 128
           FL++ A   FH  +  ++DD  TD K+G  +  +  NV+
Sbjct: 183 FLVRHAHALFHICKFAVVDDSPTDDKVGDTREANIFNVL 221


>03_02_0386 +
           8009884-8010133,8010274-8010338,8010545-8010658,
           8010736-8010895,8010975-8011093,8011209-8011635,
           8011834-8012057,8012863-8012973,8013056-8013188,
           8013259-8013365,8013430-8013444,8013482-8013571,
           8013855-8013917,8013973-8014053,8014136-8014208,
           8014312-8014367,8014460-8014554,8014649-8014683,
           8015449-8015525
          Length = 764

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 145 SYVNVIVTHATVSITSNLLRKSEFFCRHFDVNSFNRLKVLHVYH 14
           +YV V+V  A++   ++   K +FFCRH    S +R+   HV H
Sbjct: 667 TYV-VVVPTASIGTEADTA-KYKFFCRHTTHKSTSRVVRYHVVH 708


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,287,377
Number of Sequences: 37544
Number of extensions: 217138
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)