Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L03
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.36 
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   7.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -3

Query: 181 ETDIKIGWIKYFSYVNVIVTHAT 113
           +TD+ +  +K+F+Y+ VI  H++
Sbjct: 154 QTDVWVELLKHFNYMKVIFIHSS 176


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 170 YVRLAIIDQNDLDSVEVCG 226
           Y ++ +++  D+DSVE CG
Sbjct: 187 YFKVVVVE--DVDSVECCG 203


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 350  YNTCDRLR 373
            YNTCDR++
Sbjct: 1661 YNTCDRIK 1668


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 354 ILAIDYGFYDY 386
           +L  DY FYDY
Sbjct: 24  VLDFDYYFYDY 34


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +1

Query: 61 NVCKRIHSS 87
          N+CKR++SS
Sbjct: 36 NICKRVYSS 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,338
Number of Sequences: 438
Number of extensions: 2642
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)