Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_L02
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    36   0.005
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    29   0.42 
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    29   0.56 
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.0  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.2  
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...    25   9.1  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = +2

Query: 410 VEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFST 589
           V  + K+V  I+ + E    +LE +     D G+  +  GYR Q ++   P KGG+RF  
Sbjct: 28  VHPELKRVLPIISIPE---RVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHP 84

Query: 590 EVTRDEVKAL 619
            V    +K L
Sbjct: 85  SVNLSILKFL 94


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 430 FLLFFFNRHSGFQIFYQFIFD 368
           F L FFNRHS F +  QF+ D
Sbjct: 721 FTLHFFNRHSPFHLISQFLQD 741


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = -2

Query: 559 SSMSRVLRSITKNHFIIAR 503
           SS+SR++R++ KNH IIA+
Sbjct: 634 SSISRIIRNVWKNHVIIAK 652


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -1

Query: 422 FFLQQAFWISNLLPIYLRLPDML-YGKNTQPCGKI*GLH--W*VCL 294
           F++   FWI  LL ++L LP+ L   ++ +   KI G    W  CL
Sbjct: 316 FYITSTFWIIYLLYVWLILPESLDVSESKEQQNKISGFSSIWRSCL 361


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 461 CDHILEIQFPLRR 499
           CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +2

Query: 332  MVEYFFHRACQVIEDKLVEDLKSRMPVEEKKKKV 433
            +++ ++H AC+V+ D+LV   +    + E +K +
Sbjct: 2744 LIKVWYHEACRVLLDRLVSQKECSWGMTELQKVI 2777


>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 362 QVIEDKLVEDLKSRMPVEEKKKKVAGILKLMEPCDHILEIQFPL 493
           QV+  +L++++ + +  +EK   VA  L+ M P D +  +Q  +
Sbjct: 57  QVLSRELLKNIDTSIAADEKPMIVAVDLQPMAPIDGVCTLQLDI 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,588
Number of Sequences: 5004
Number of extensions: 60725
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)